Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47379 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.47014 * 30.00505 * 3 2 1 6 6 H 1.48501 * 109.46999 * 150.00225 * 3 2 1 7 7 C 1.40236 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.40000 * 119.99903 * 359.97438 * 7 2 1 10 10 N 1.33264 * 126.04646 * 359.97382 * 9 7 2 11 11 C 1.33046 * 109.28842 * 179.91810 * 10 9 7 12 12 C 1.35505 * 108.42641 * 359.97438 * 11 10 9 13 13 N 1.36701 * 107.37666 * 0.09468 * 12 11 10 14 14 C 1.46408 * 124.51768 * 179.76462 * 13 12 11 15 15 C 1.53303 * 108.69452 * 342.86759 * 14 13 12 16 16 C 1.53127 * 109.65217 * 50.60930 * 15 14 13 17 17 C 1.50765 * 128.47007 * 180.36294 * 12 11 10 18 18 H 0.97005 * 119.99714 * 359.97438 * 1 2 3 19 19 H 1.07998 * 125.78703 * 179.97438 * 11 10 9 20 20 H 1.09001 * 109.59879 * 102.62399 * 14 13 12 21 21 H 1.08996 * 109.60261 * 222.94291 * 14 13 12 22 22 H 1.08999 * 109.44186 * 170.66786 * 15 14 13 23 23 H 1.09002 * 109.43264 * 290.55718 * 15 14 13 24 24 H 1.08999 * 109.49735 * 50.17282 * 16 15 14 25 25 H 1.09007 * 109.49292 * 170.26901 * 16 15 14 26 26 H 1.09010 * 109.74044 * 283.88259 * 17 12 11 27 27 H 1.09002 * 109.74187 * 44.58354 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4385 2.6526 0.7002 6 1 3.5385 1.4400 0.7000 7 6 2.0080 -1.2145 -0.0005 8 1 3.0880 -1.2146 -0.0010 9 6 1.3080 -2.4269 -0.0005 10 7 -0.0173 -2.5672 0.0004 11 6 -0.3221 -3.8623 -0.0017 12 6 0.8311 -4.5737 -0.0047 13 7 1.8636 -3.6778 -0.0022 14 6 3.2808 -4.0451 0.0008 15 6 3.4073 -5.5118 0.4285 16 6 2.4602 -6.3759 -0.4088 17 6 1.0096 -6.0707 -0.0154 18 1 -0.4850 0.8401 0.0004 19 1 -1.3196 -4.2763 -0.0012 20 1 3.6932 -3.9193 -1.0003 21 1 3.8219 -3.4095 0.7017 22 1 4.4335 -5.8467 0.2768 23 1 3.1476 -5.6059 1.4829 24 1 2.6023 -6.1520 -1.4660 25 1 2.6731 -7.4295 -0.2276 26 1 0.8068 -6.4728 0.9774 27 1 0.3290 -6.5175 -0.7402 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213815398.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = 41.903329 kcal Electronic energy + Delta-G solvation = -11888.384222 eV Core-core repulsion = 9839.360415 eV Total energy + Delta-G solvation = -2049.023806 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.18552 -35.60223 -33.20108 -31.66540 -28.97262 -27.72750 -24.76421 -22.93461 -20.91224 -19.89618 -17.86007 -16.83272 -15.37704 -14.69593 -14.36084 -13.55743 -13.30035 -12.96952 -12.79403 -12.50543 -11.88577 -11.28881 -11.26166 -10.88635 -10.56876 -10.50930 -10.39228 -10.21419 -9.97418 -9.11115 -7.80684 -7.68240 -6.87575 -6.33110 -4.19082 3.08505 3.18825 3.21586 3.70191 4.06294 4.45283 4.75941 5.15498 5.21093 5.33281 5.71149 5.78351 5.92724 6.01455 6.11565 6.23371 6.37974 6.39580 6.46564 6.61097 6.66772 7.23277 7.39361 7.69969 8.25234 8.30051 8.64796 9.04177 9.41851 10.31761 10.60425 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.059712 B = 0.011952 C = 0.010132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.804121 B = 2342.223830 C = 2762.803135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.082 3.918 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.378 3.622 10 N -0.519 5.519 11 C -0.010 4.010 12 C -0.148 4.148 13 N -0.502 5.502 14 C 0.126 3.874 15 C -0.127 4.127 16 C -0.118 4.118 17 C -0.021 4.021 18 H 0.271 0.729 19 H 0.132 0.868 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -6.598 0.048 8.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.504 4.504 8 H 0.094 0.906 9 C 0.135 3.865 10 N -0.240 5.240 11 C -0.162 4.162 12 C -0.259 4.259 13 N -0.193 5.193 14 C 0.002 3.998 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.060 4.060 18 H 0.082 0.918 19 H 0.150 0.850 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.016 -5.895 0.053 7.740 hybrid contribution 1.016 0.055 -0.014 1.018 sum 6.032 -5.839 0.039 8.395 Atomic orbital electron populations 1.70024 1.06875 1.27454 1.32584 1.25687 0.94735 1.00108 0.93589 0.86319 0.80104 0.81255 0.78888 1.19704 1.20303 1.18965 1.18077 0.93280 0.87703 1.51294 0.90645 1.20095 0.87598 0.83279 0.95558 1.71489 1.10113 1.14163 1.28187 1.21732 0.95386 0.91916 1.07182 1.20365 0.89181 0.90769 1.25592 1.45230 1.04059 1.06916 1.63067 1.21321 0.82617 0.95075 1.00780 1.21793 0.99371 0.94721 1.00591 1.21548 0.95801 0.98382 0.99807 1.19757 0.95221 0.91082 0.99911 0.91821 0.85049 0.92479 0.91065 0.91323 0.91628 0.92191 0.92317 0.92838 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.47 11.90 55.56 0.66 -20.81 15 2 C 0.08 2.23 5.50 -17.29 -0.10 2.13 15 3 Si 0.91 19.65 29.56 -169.99 -5.03 14.63 15 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 7 C -0.46 -13.06 9.13 -38.17 -0.35 -13.41 15 8 H 0.08 1.96 7.74 -52.49 -0.41 1.56 15 9 C 0.38 10.95 7.46 -155.99 -1.16 9.78 15 10 N -0.52 -15.68 9.43 -12.93 -0.12 -15.80 15 11 C -0.01 -0.25 11.82 -18.00 -0.21 -0.46 15 12 C -0.15 -3.51 6.61 -81.37 -0.54 -4.04 15 13 N -0.50 -12.45 3.19 -111.52 -0.36 -12.81 15 14 C 0.13 2.46 6.68 -3.93 -0.03 2.44 15 15 C -0.13 -1.98 5.93 -26.51 -0.16 -2.14 15 16 C -0.12 -1.81 5.95 -26.48 -0.16 -1.97 15 17 C -0.02 -0.38 6.31 -27.66 -0.17 -0.56 15 18 H 0.27 7.09 8.29 -40.82 -0.34 6.75 15 19 H 0.13 3.08 8.06 -52.49 -0.42 2.65 15 20 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 22 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.06 1.05 8.12 -51.93 -0.42 0.63 15 24 H 0.06 0.95 8.12 -51.93 -0.42 0.53 15 25 H 0.06 0.74 8.14 -51.92 -0.42 0.31 15 26 H 0.05 0.90 8.14 -51.92 -0.42 0.48 15 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 LS Contribution 229.97 15.07 3.47 3.47 Total: -1.00 -32.46 229.97 -7.59 -40.05 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.34 Total: -0.49 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.87 Total: -8.23 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.18 Total: -49.42 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.46 -7.59 -40.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213815398.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.957 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds