Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48498 * 109.47379 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.47014 * 30.00505 * 3 2 1 6 6 H 1.48501 * 109.46999 * 150.00225 * 3 2 1 7 7 C 1.40236 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.40000 * 119.99903 * 359.97438 * 7 2 1 10 10 N 1.33264 * 126.04646 * 359.97382 * 9 7 2 11 11 C 1.33046 * 109.28842 * 179.91810 * 10 9 7 12 12 C 1.35505 * 108.42641 * 359.97438 * 11 10 9 13 13 N 1.36701 * 107.37666 * 0.09468 * 12 11 10 14 14 C 1.46408 * 124.51768 * 179.76462 * 13 12 11 15 15 C 1.53303 * 108.69452 * 342.86759 * 14 13 12 16 16 C 1.53127 * 109.65217 * 50.60930 * 15 14 13 17 17 C 1.50765 * 128.47007 * 180.36294 * 12 11 10 18 18 H 0.97005 * 119.99714 * 359.97438 * 1 2 3 19 19 H 1.07998 * 125.78703 * 179.97438 * 11 10 9 20 20 H 1.09001 * 109.59879 * 102.62399 * 14 13 12 21 21 H 1.08996 * 109.60261 * 222.94291 * 14 13 12 22 22 H 1.08999 * 109.44186 * 170.66786 * 15 14 13 23 23 H 1.09002 * 109.43264 * 290.55718 * 15 14 13 24 24 H 1.08999 * 109.49735 * 50.17282 * 16 15 14 25 25 H 1.09007 * 109.49292 * 170.26901 * 16 15 14 26 26 H 1.09010 * 109.74044 * 283.88259 * 17 12 11 27 27 H 1.09002 * 109.74187 * 44.58354 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 -1.4000 5 1 1.4385 2.6526 0.7002 6 1 3.5385 1.4400 0.7000 7 6 2.0080 -1.2145 -0.0005 8 1 3.0880 -1.2146 -0.0010 9 6 1.3080 -2.4269 -0.0005 10 7 -0.0173 -2.5672 0.0004 11 6 -0.3221 -3.8623 -0.0017 12 6 0.8311 -4.5737 -0.0047 13 7 1.8636 -3.6778 -0.0022 14 6 3.2808 -4.0451 0.0008 15 6 3.4073 -5.5118 0.4285 16 6 2.4602 -6.3759 -0.4088 17 6 1.0096 -6.0707 -0.0154 18 1 -0.4850 0.8401 0.0004 19 1 -1.3196 -4.2763 -0.0012 20 1 3.6932 -3.9193 -1.0003 21 1 3.8219 -3.4095 0.7017 22 1 4.4335 -5.8467 0.2768 23 1 3.1476 -5.6059 1.4829 24 1 2.6023 -6.1520 -1.4660 25 1 2.6731 -7.4295 -0.2276 26 1 0.8068 -6.4728 0.9774 27 1 0.3290 -6.5175 -0.7402 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213815398.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = 21.254565 kcal Electronic energy + Delta-G solvation = -11889.279619 eV Core-core repulsion = 9839.360415 eV Total energy + Delta-G solvation = -2049.919204 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.09587 -37.14969 -35.19470 -33.37388 -30.75615 -29.60187 -26.59432 -24.54458 -22.48089 -21.91544 -19.51155 -18.75041 -17.36621 -16.29939 -16.10234 -14.97761 -14.76599 -14.60770 -14.47500 -14.33262 -13.65363 -13.08240 -12.97351 -12.53290 -12.41257 -11.97633 -11.84518 -11.68578 -11.52252 -11.06143 -9.78752 -9.74374 -8.89890 -8.32716 -6.27316 1.36027 1.41740 1.57257 1.81481 2.26028 2.68121 2.73747 3.60470 3.84063 3.93080 4.04034 4.33086 4.49137 4.58949 4.66493 4.82156 4.94003 4.99550 5.05448 5.11130 5.24971 5.38629 5.45000 5.73492 6.26713 6.30155 6.69204 7.01440 7.41865 8.29123 8.64140 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.059712 B = 0.011952 C = 0.010132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.804121 B = 2342.223830 C = 2762.803135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.495 4.495 8 H 0.086 0.914 9 C 0.335 3.665 10 N -0.566 5.566 11 C -0.066 4.066 12 C -0.119 4.119 13 N -0.505 5.505 14 C 0.112 3.888 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.025 4.025 18 H 0.275 0.725 19 H 0.146 0.854 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.110 0.890 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.811 -8.013 0.068 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.535 4.535 8 H 0.104 0.896 9 C 0.090 3.910 10 N -0.289 5.289 11 C -0.216 4.216 12 C -0.232 4.232 13 N -0.194 5.194 14 C -0.011 4.011 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.063 4.063 18 H 0.085 0.915 19 H 0.164 0.836 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.129 0.871 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.169 -7.357 0.073 10.272 hybrid contribution 0.343 0.317 -0.023 0.467 sum 7.511 -7.040 0.050 10.295 Atomic orbital electron populations 1.70178 1.09052 1.28773 1.34315 1.26807 0.95609 1.04154 0.92351 0.85027 0.78690 0.75431 0.79263 1.18824 1.19635 1.17655 1.18509 0.93932 0.88476 1.52571 0.89607 1.20447 0.87926 0.85139 0.97523 1.71323 1.11702 1.16549 1.29282 1.22170 0.97374 0.91552 1.10527 1.21285 0.88061 0.93587 1.20260 1.45577 1.06430 1.05999 1.61383 1.21759 0.79605 0.98172 1.01561 1.21823 1.02037 0.91566 1.00243 1.21573 0.93397 1.00811 0.99335 1.20015 0.98041 0.86559 1.01718 0.91488 0.83645 0.91633 0.91076 0.87136 0.91921 0.92653 0.88048 0.90971 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.91 11.90 21.88 0.26 -47.65 15 2 C 0.03 1.61 5.50 85.35 0.47 2.08 15 3 Si 1.00 40.93 29.56 68.60 2.03 42.96 15 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 6 H -0.25 -9.75 7.11 99.48 0.71 -9.05 15 7 C -0.50 -28.66 9.13 23.18 0.21 -28.45 15 8 H 0.09 4.54 7.74 -2.91 -0.02 4.52 15 9 C 0.34 20.05 7.46 133.73 1.00 21.05 15 10 N -0.57 -35.78 9.43 -194.82 -1.84 -37.62 15 11 C -0.07 -3.58 11.82 83.88 0.99 -2.59 15 12 C -0.12 -5.57 6.61 41.19 0.27 -5.30 15 13 N -0.50 -25.01 3.19 -506.74 -1.62 -26.62 15 14 C 0.11 4.15 6.68 86.50 0.58 4.73 15 15 C -0.12 -3.22 5.93 30.74 0.18 -3.04 15 16 C -0.11 -2.96 5.95 30.76 0.18 -2.78 15 17 C -0.03 -0.82 6.31 29.99 0.19 -0.63 15 18 H 0.28 15.00 8.29 -92.70 -0.77 14.24 15 19 H 0.15 7.05 8.06 -2.91 -0.02 7.03 15 20 H 0.07 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 22 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 23 H 0.06 1.76 8.12 -2.39 -0.02 1.74 15 24 H 0.05 1.52 8.12 -2.39 -0.02 1.50 15 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 15 26 H 0.07 2.16 8.14 -2.38 -0.02 2.14 15 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 15 Total: -1.00 -74.27 229.97 4.06 -70.21 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.15 Total: 13.65 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 4.07 Total: -14.93 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.19 Total: -111.89 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -74.27 4.06 -70.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213815398.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.462 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds