Wall clock time and date at job start Mon Mar 30 2020 01:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36357 * 119.91787 * 2 1 4 4 C 1.40874 * 119.83558 * 180.02562 * 3 2 1 5 5 C 1.41134 * 120.15264 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99665 * 205.58782 * 5 4 3 7 7 C 1.39867 * 120.00503 * 25.58338 * 5 4 3 8 8 N 1.30900 * 119.99864 * 15.44753 * 7 5 4 9 9 Si 1.86795 * 120.00043 * 195.44205 * 7 5 4 10 10 H 1.48504 * 109.47071 * 94.97319 * 9 7 5 11 11 H 1.48500 * 109.47157 * 214.96634 * 9 7 5 12 12 H 1.48495 * 109.47648 * 334.97109 * 9 7 5 13 13 C 1.40902 * 119.69042 * 359.97438 * 4 3 2 14 14 C 1.50697 * 120.08518 * 180.25705 * 13 4 3 15 15 C 1.36323 * 119.83207 * 359.97438 * 13 4 3 16 16 C 1.39546 * 119.91971 * 180.02562 * 2 1 3 17 17 N 1.38857 * 119.84234 * 359.97438 * 16 2 1 18 18 H 1.09004 * 109.47023 * 269.98388 * 1 2 3 19 19 H 1.08999 * 109.47235 * 29.98379 * 1 2 3 20 20 H 1.09000 * 109.46979 * 149.98355 * 1 2 3 21 21 H 1.08003 * 120.08423 * 359.97438 * 3 2 1 22 22 H 0.96993 * 119.99988 * 179.97438 * 8 7 5 23 23 H 1.09004 * 109.47106 * 269.72557 * 14 13 4 24 24 H 1.08997 * 109.46943 * 29.71714 * 14 13 4 25 25 H 1.08996 * 109.47316 * 149.72505 * 14 13 4 26 26 H 1.08004 * 119.91722 * 180.02562 * 15 13 4 27 27 H 0.97001 * 120.00030 * 179.97438 * 17 16 2 28 28 H 0.96998 * 120.00295 * 359.97349 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 -0.0005 5 6 4.3065 2.3992 -0.0011 6 1 5.3071 2.4408 -0.4055 7 6 3.7150 3.5537 0.5219 8 7 2.6488 3.4590 1.2754 9 14 4.4467 5.2306 0.1453 10 1 3.7451 5.8264 -1.0201 11 1 4.2861 6.1172 1.3257 12 1 5.8903 5.0817 -0.1692 13 6 4.2920 -0.0452 -0.0005 14 6 5.7989 -0.0578 0.0047 15 6 3.5988 -1.2191 0.0005 16 6 2.2030 -1.2095 -0.0005 17 7 1.5037 -2.4091 -0.0005 18 1 -0.3633 -0.0003 1.0277 19 1 -0.3634 0.8901 -0.5136 20 1 -0.3633 -0.8898 -0.5141 21 1 1.6471 2.1172 -0.0004 22 1 2.2389 4.2596 1.6384 23 1 6.1658 -0.0637 -1.0217 24 1 6.1678 0.8307 0.5172 25 1 6.1530 -0.9492 0.5223 26 1 4.1310 -2.1589 0.0009 27 1 1.9852 -3.2512 -0.0013 28 1 0.5338 -2.4051 0.0002 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218123839.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:57 Heat of formation + Delta-G solvation = 3.900118 kcal Electronic energy + Delta-G solvation = -11591.266367 eV Core-core repulsion = 9606.020529 eV Total energy + Delta-G solvation = -1985.245838 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.15252 -34.53066 -32.74648 -31.67621 -28.33054 -27.96091 -24.83791 -23.25897 -20.89996 -19.10085 -16.77988 -15.95145 -15.14133 -14.81850 -13.63071 -13.15610 -12.94395 -12.53664 -12.23942 -11.81258 -11.48807 -11.40740 -11.01840 -10.96138 -10.77354 -10.70626 -10.43050 -9.47413 -9.29086 -9.21755 -8.57393 -7.15037 -6.57713 -6.31545 -3.98454 2.92816 3.08398 3.17820 3.21416 3.40666 4.08987 4.78646 5.05195 5.74068 6.03950 6.16533 6.32672 6.46006 6.49772 6.57453 6.75241 6.82660 6.96487 7.19560 7.32162 7.42022 7.76381 7.79769 7.90592 8.21952 8.42506 8.64555 8.82879 8.87395 9.11932 9.21435 10.43550 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.043668 B = 0.013182 C = 0.010434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.047849 B = 2123.674225 C = 2682.937335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.148 4.148 3 C -0.116 4.116 4 C 0.075 3.925 5 C -0.462 4.462 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.811 5.811 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.264 1.264 13 C -0.159 4.159 14 C -0.085 4.085 15 C -0.163 4.163 16 C 0.101 3.899 17 N -0.897 5.897 18 H 0.049 0.951 19 H 0.052 0.948 20 H 0.042 0.958 21 H 0.121 0.879 22 H 0.275 0.725 23 H 0.041 0.959 24 H 0.062 0.938 25 H 0.035 0.965 26 H 0.086 0.914 27 H 0.379 0.621 28 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -3.749 -1.582 4.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C -0.136 4.136 4 C 0.072 3.928 5 C -0.493 4.493 6 H 0.093 0.907 7 C -0.142 4.142 8 N -0.438 5.438 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.188 1.188 13 C -0.161 4.161 14 C -0.142 4.142 15 C -0.185 4.185 16 C 0.002 3.998 17 N -0.441 5.441 18 H 0.068 0.932 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.139 0.861 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.205 0.795 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.278 -3.494 -1.438 3.989 hybrid contribution 0.072 0.469 -0.038 0.476 sum -1.206 -3.025 -1.477 3.576 Atomic orbital electron populations 1.20455 0.94057 1.00191 1.00190 1.18885 0.93738 0.92600 1.09942 1.20871 0.94407 0.95738 1.02547 1.17341 0.91630 0.91581 0.92266 1.19369 1.01531 0.92542 1.35901 0.90749 1.25796 0.94543 1.00824 0.93017 1.69847 1.18956 1.30566 1.24468 0.86397 0.80334 0.81890 0.78574 1.19722 1.20620 1.18850 1.19312 0.94145 0.92824 1.09849 1.20413 0.93751 1.00450 0.99565 1.19649 0.91530 0.96458 1.10871 1.17176 0.90719 0.85290 1.06593 1.41921 1.07405 1.04885 1.89857 0.93239 0.92885 0.93907 0.86081 0.91473 0.94063 0.91932 0.94555 0.89626 0.79509 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.55 36.00 0.34 -1.43 15 2 C -0.15 -3.51 5.86 -104.81 -0.61 -4.12 15 3 C -0.12 -3.08 8.26 -39.26 -0.32 -3.40 15 4 C 0.07 2.04 5.57 -106.79 -0.60 1.44 15 5 C -0.46 -12.53 8.12 -37.87 -0.31 -12.84 15 6 H 0.07 1.95 6.85 -52.49 -0.36 1.59 15 7 C 0.07 1.89 5.18 -17.34 -0.09 1.80 15 8 N -0.81 -21.70 10.88 55.54 0.60 -21.09 15 9 Si 0.90 19.42 29.59 -169.99 -5.03 14.39 15 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 12 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 13 C -0.16 -3.97 5.90 -104.31 -0.62 -4.59 15 14 C -0.09 -1.83 9.40 36.00 0.34 -1.49 15 15 C -0.16 -3.78 9.46 -39.77 -0.38 -4.15 15 16 C 0.10 2.28 6.75 -83.69 -0.56 1.72 15 17 N -0.90 -15.91 8.95 32.51 0.29 -15.62 15 18 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 19 H 0.05 0.99 8.08 -51.93 -0.42 0.57 15 20 H 0.04 0.71 6.53 -51.93 -0.34 0.37 15 21 H 0.12 3.34 6.14 -52.48 -0.32 3.01 15 22 H 0.27 6.75 8.30 -40.82 -0.34 6.41 15 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.06 1.38 6.76 -51.93 -0.35 1.03 15 25 H 0.04 0.69 8.08 -51.93 -0.42 0.27 15 26 H 0.09 1.78 8.06 -52.48 -0.42 1.35 15 27 H 0.38 5.84 8.83 -40.82 -0.36 5.48 15 28 H 0.38 6.03 6.78 -40.82 -0.28 5.75 15 LS Contribution 235.47 15.07 3.55 3.55 Total: -1.00 -28.60 235.47 -6.64 -35.24 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.25 Total: 10.60 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.81 Total: -27.07 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.90 Total: -36.71 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.60 -6.64 -35.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218123839.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.143 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds