Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47364 * 2 1 4 4 C 1.36356 * 120.08402 * 265.02398 * 3 2 1 5 5 C 1.39546 * 120.15856 * 179.97438 * 4 3 2 6 6 N 1.38856 * 119.83788 * 179.97438 * 5 4 3 7 7 C 1.39587 * 120.31619 * 359.96018 * 5 4 3 8 8 C 1.36320 * 120.16236 * 359.77892 * 7 5 4 9 9 C 1.40874 * 120.07791 * 85.00352 * 3 2 1 10 10 C 1.41141 * 120.15532 * 359.97438 * 9 3 2 11 11 H 1.08000 * 120.00124 * 29.65467 * 10 9 3 12 12 C 1.39862 * 119.99519 * 209.65883 * 10 9 3 13 13 N 1.30912 * 119.99398 * 197.29515 * 12 10 9 14 14 Si 1.86801 * 120.00505 * 17.29325 * 12 10 9 15 15 H 1.48497 * 109.46884 * 269.99807 * 14 12 10 16 16 H 1.48495 * 109.46913 * 29.99840 * 14 12 10 17 17 H 1.48505 * 109.47061 * 150.00130 * 14 12 10 18 18 H 1.08995 * 109.46731 * 179.97438 * 1 2 3 19 19 H 1.09003 * 109.46599 * 299.99501 * 1 2 3 20 20 H 1.08997 * 109.46897 * 59.99573 * 1 2 3 21 21 H 1.09007 * 109.47066 * 240.00346 * 2 1 3 22 22 H 1.09002 * 109.47336 * 120.00530 * 2 1 3 23 23 H 1.07999 * 119.92109 * 359.97438 * 4 3 2 24 24 H 0.96997 * 120.00214 * 0.02562 * 6 5 4 25 25 H 0.97002 * 120.00009 * 180.02562 * 6 5 4 26 26 H 1.07999 * 119.91447 * 180.02562 * 7 5 4 27 27 H 1.07998 * 120.08188 * 180.22674 * 8 7 5 28 28 H 0.96999 * 120.00349 * 355.42971 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3568 2.0311 -1.1754 5 6 2.8216 3.3469 -1.1773 6 7 3.1505 3.9617 -2.3781 7 6 2.9573 4.0479 0.0221 8 6 2.6317 3.4522 1.2043 9 6 2.1677 2.1219 1.2144 10 6 1.8330 1.4970 2.4349 11 1 1.9372 0.4272 2.5403 12 6 1.3662 2.2632 3.5078 13 7 1.3765 1.7675 4.7194 14 14 0.7282 3.9938 3.2120 15 1 1.8484 4.9614 3.3310 16 1 0.1428 4.0794 1.8500 17 1 -0.3136 4.3163 4.2200 18 1 -0.3632 -1.0276 -0.0005 19 1 -0.3632 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 2.2537 1.4949 -2.1072 24 1 3.0566 3.4769 -3.2129 25 1 3.4742 4.8761 -2.3821 26 1 3.3173 5.0661 0.0131 27 1 2.7337 3.9970 2.1312 28 1 1.6451 0.8469 4.8645 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238333549.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -18.049573 kcal Electronic energy + Delta-G solvation = -11674.757425 eV Core-core repulsion = 9688.559776 eV Total energy + Delta-G solvation = -1986.197648 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.10024 -36.36409 -35.02821 -33.74094 -30.58597 -30.03759 -25.76451 -24.38574 -23.01329 -21.08044 -19.92364 -17.63133 -17.27889 -16.09568 -15.80505 -15.76053 -14.69423 -14.46630 -14.28127 -13.93393 -13.60305 -13.04803 -12.78439 -12.59969 -12.31697 -11.89559 -11.83038 -11.55772 -11.04743 -10.91935 -10.52610 -9.38197 -9.17837 -8.31933 -6.14347 0.89274 1.04658 1.39851 1.58460 1.78034 2.27424 2.79783 3.44523 3.59967 4.21247 4.25835 4.46829 4.56994 4.72101 4.89695 4.97567 5.09232 5.16621 5.27834 5.48697 5.59750 5.65525 5.72698 5.78700 6.06768 6.25813 6.55997 6.71790 7.00818 7.13383 7.38033 8.22671 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.017253 C = 0.012654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.967912 B = 1622.477969 C = 2212.129676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.160 4.160 5 C 0.121 3.879 6 N -0.876 5.876 7 C -0.169 4.169 8 C -0.211 4.211 9 C 0.028 3.972 10 C -0.539 4.539 11 H 0.046 0.954 12 C 0.002 3.998 13 N -0.873 5.873 14 Si 1.105 2.895 15 H -0.265 1.265 16 H -0.265 1.265 17 H -0.288 1.288 18 H 0.065 0.935 19 H 0.032 0.968 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.124 0.876 24 H 0.399 0.601 25 H 0.398 0.602 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 2.948 -11.440 11.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.182 4.182 5 C 0.019 3.981 6 N -0.420 5.420 7 C -0.191 4.191 8 C -0.231 4.231 9 C 0.025 3.975 10 C -0.571 4.571 11 H 0.064 0.936 12 C -0.208 4.208 13 N -0.501 5.501 14 Si 0.929 3.071 15 H -0.191 1.191 16 H -0.190 1.190 17 H -0.216 1.216 18 H 0.084 0.916 19 H 0.051 0.949 20 H 0.077 0.923 21 H 0.091 0.909 22 H 0.059 0.941 23 H 0.142 0.858 24 H 0.227 0.773 25 H 0.226 0.774 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.357 4.170 -10.541 11.342 hybrid contribution 0.855 -1.616 -0.364 1.864 sum 0.498 2.555 -10.905 11.211 Atomic orbital electron populations 1.21573 0.95047 1.01224 1.01073 1.20193 0.96248 0.92859 1.00468 1.19731 1.04645 0.97425 0.92363 1.20144 1.06498 0.94279 0.97326 1.17526 1.01000 0.92542 0.86990 1.41777 1.78256 1.17394 1.04563 1.20190 1.07462 0.99927 0.91529 1.20838 1.07785 0.97128 0.97350 1.17691 0.94255 0.92525 0.93052 1.20286 1.43181 0.95382 0.98239 0.93553 1.28014 0.92651 1.08897 0.91199 1.70653 1.40335 1.16669 1.22415 0.83172 0.76797 0.70833 0.76304 1.19140 1.18983 1.21577 0.91614 0.94923 0.92323 0.90902 0.94100 0.85847 0.77267 0.77353 0.86139 0.88438 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.86 9.90 71.98 0.71 -4.14 15 2 C -0.06 -2.43 5.58 29.85 0.17 -2.26 15 3 C -0.14 -6.35 5.16 -19.66 -0.10 -6.45 15 4 C -0.16 -6.28 9.44 22.15 0.21 -6.07 15 5 C 0.12 4.53 6.77 38.67 0.26 4.80 15 6 N -0.88 -23.37 9.05 -51.07 -0.46 -23.83 15 7 C -0.17 -6.96 9.82 22.15 0.22 -6.74 15 8 C -0.21 -10.27 7.20 22.47 0.16 -10.11 15 9 C 0.03 1.46 5.13 -21.27 -0.11 1.35 15 10 C -0.54 -30.70 8.60 23.38 0.20 -30.50 15 11 H 0.05 2.80 6.60 -2.91 -0.02 2.78 15 12 C 0.00 0.09 5.42 85.22 0.46 0.55 15 13 N -0.87 -51.34 13.66 21.82 0.30 -51.05 15 14 Si 1.11 52.22 24.89 68.60 1.71 53.93 15 15 H -0.27 -11.67 6.44 99.48 0.64 -11.03 15 16 H -0.27 -12.32 7.02 99.48 0.70 -11.62 15 17 H -0.29 -13.14 7.11 99.48 0.71 -12.44 15 18 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 19 H 0.03 1.38 7.96 -2.39 -0.02 1.36 15 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.07 2.46 8.05 -2.38 -0.02 2.44 15 22 H 0.04 1.81 6.51 -2.39 -0.02 1.80 15 23 H 0.12 4.03 8.05 -2.91 -0.02 4.01 15 24 H 0.40 8.67 8.83 -92.71 -0.82 7.85 15 25 H 0.40 8.85 8.83 -92.71 -0.82 8.03 15 26 H 0.12 4.22 8.06 -2.91 -0.02 4.20 15 27 H 0.10 4.80 4.43 -2.91 -0.01 4.79 15 28 H 0.27 15.82 8.73 -92.71 -0.81 15.01 15 Total: -1.00 -62.57 233.50 3.15 -59.42 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.57 Total: 21.12 kcal Atomic # 6 Polarization: -61.77 SS G_CDS: 2.18 Total: -59.58 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -0.16 Total: -74.88 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 1.71 Total: 53.93 kcal Total: -62.57 3.15 -59.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238333549.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.371 kcal (2) G-P(sol) polarization free energy of solvation -62.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds