Wall clock time and date at job start Mon Mar 30 2020 02:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50707 * 109.47042 * 2 1 4 4 C 1.36452 * 120.09109 * 265.23512 * 3 2 1 5 5 C 1.39299 * 120.18341 * 180.29976 * 4 3 2 6 6 O 1.35676 * 119.81692 * 179.69280 * 5 4 3 7 7 C 1.39340 * 120.36288 * 359.71564 * 5 4 3 8 8 C 1.36417 * 120.18356 * 0.02562 * 7 5 4 9 9 C 1.40810 * 120.09434 * 84.99650 * 3 2 1 10 10 C 1.41213 * 120.17980 * 359.97438 * 9 3 2 11 11 H 1.08002 * 120.00432 * 29.18722 * 10 9 3 12 12 C 1.39896 * 120.00176 * 209.18820 * 10 9 3 13 13 N 1.30874 * 120.00255 * 197.15781 * 12 10 9 14 14 Si 1.86803 * 119.99575 * 17.15050 * 12 10 9 15 15 H 1.48493 * 109.47260 * 270.00047 * 14 12 10 16 16 H 1.48499 * 109.47151 * 30.00465 * 14 12 10 17 17 H 1.48508 * 109.46641 * 150.00288 * 14 12 10 18 18 H 1.08998 * 109.47070 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47515 * 300.00483 * 1 2 3 20 20 H 1.08994 * 109.47009 * 60.00427 * 1 2 3 21 21 H 1.08996 * 109.47721 * 240.00005 * 2 1 3 22 22 H 1.09006 * 109.47279 * 119.99347 * 2 1 3 23 23 H 1.08000 * 119.91112 * 0.02562 * 4 3 2 24 24 H 0.96692 * 114.00098 * 270.02276 * 6 5 4 25 25 H 1.07997 * 119.90289 * 179.97438 * 7 5 4 26 26 H 1.08000 * 120.09228 * 179.97438 * 8 7 5 27 27 H 0.97004 * 120.00143 * 355.44494 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3528 2.0332 -1.1765 5 6 2.8232 3.3444 -1.1783 6 8 3.1456 3.9439 -2.3519 7 6 2.9649 4.0434 0.0188 8 6 2.6439 3.4475 1.2031 9 6 2.1675 2.1220 1.2136 10 6 1.8327 1.4977 2.4352 11 1 1.9298 0.4270 2.5390 12 6 1.3753 2.2659 3.5112 13 7 1.3841 1.7679 4.7214 14 14 0.7523 4.0028 3.2204 15 1 1.8814 4.9600 3.3386 16 1 0.1643 4.0965 1.8600 17 1 -0.2842 4.3326 4.2315 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8901 23 1 2.2457 1.4984 -2.1087 24 1 4.0674 3.8203 -2.6165 25 1 3.3307 5.0595 0.0088 26 1 2.7547 3.9905 2.1301 27 1 1.6450 0.8445 4.8641 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238336809.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:29 Heat of formation + Delta-G solvation = -46.533295 kcal Electronic energy + Delta-G solvation = -11772.278030 eV Core-core repulsion = 9687.126572 eV Total energy + Delta-G solvation = -2085.151457 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.61864 -36.20561 -33.52567 -32.78923 -29.60438 -28.53152 -24.46114 -22.79741 -21.36772 -19.64234 -18.28793 -16.96443 -15.03461 -14.94068 -14.27640 -13.95970 -13.28202 -12.90690 -12.82703 -12.51068 -11.80284 -11.26892 -11.13031 -10.99063 -10.66014 -10.38836 -10.10951 -9.95132 -9.71193 -9.12591 -8.97403 -7.75239 -7.59948 -7.21127 -4.53209 2.48597 2.60902 3.18618 3.33687 3.54011 3.99853 4.41778 5.19231 5.39812 5.80843 5.83389 6.02758 6.16376 6.24574 6.44815 6.54891 6.71558 6.78127 6.89852 7.00244 7.30258 7.35084 7.50430 7.62652 7.76249 7.88496 8.26778 8.41267 8.67272 8.80744 9.98363 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.032660 B = 0.017127 C = 0.012577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.113615 B = 1634.492968 C = 2225.699546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.172 4.172 4 C -0.093 4.093 5 C -0.047 4.047 6 O -0.503 6.503 7 C -0.092 4.092 8 C -0.237 4.237 9 C 0.098 3.902 10 C -0.505 4.505 11 H 0.081 0.919 12 C 0.042 3.958 13 N -0.816 5.816 14 Si 1.072 2.928 15 H -0.277 1.277 16 H -0.262 1.262 17 H -0.290 1.290 18 H 0.040 0.960 19 H 0.062 0.938 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.355 0.645 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 0.214 -5.533 5.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C -0.173 4.173 4 C -0.112 4.112 5 C -0.092 4.092 6 O -0.310 6.310 7 C -0.111 4.111 8 C -0.256 4.256 9 C 0.095 3.905 10 C -0.534 4.534 11 H 0.099 0.901 12 C -0.177 4.177 13 N -0.439 5.439 14 Si 0.898 3.102 15 H -0.204 1.204 16 H -0.187 1.187 17 H -0.217 1.217 18 H 0.059 0.941 19 H 0.081 0.919 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.116 0.884 24 H 0.207 0.793 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.462 1.636 -4.645 4.946 hybrid contribution 1.246 -1.582 -0.710 2.135 sum 0.783 0.054 -5.355 5.412 Atomic orbital electron populations 1.21664 0.96262 0.99809 1.02032 1.20126 0.95207 0.93821 1.00308 1.19368 1.08671 0.96899 0.92351 1.20539 1.00166 0.93635 0.96816 1.17988 1.13856 0.93033 0.84277 1.84839 1.31207 1.76415 1.38507 1.20653 0.99865 0.98214 0.92358 1.20815 1.10484 0.97749 0.96564 1.17661 0.89019 0.91136 0.92703 1.20615 1.39430 0.96913 0.96397 0.90101 1.27255 0.92402 1.06791 0.91286 1.70563 1.34366 1.17041 1.21914 0.83598 0.76913 0.72746 0.76907 1.20412 1.18689 1.21728 0.94139 0.91895 0.93664 0.93672 0.91838 0.88438 0.79327 0.88293 0.87364 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 37.16 0.37 -2.26 15 2 C -0.06 -1.15 5.58 -27.88 -0.16 -1.31 15 3 C -0.17 -3.96 5.16 -104.29 -0.54 -4.50 15 4 C -0.09 -2.05 9.55 -39.83 -0.38 -2.43 15 5 C -0.05 -1.05 6.73 -38.78 -0.26 -1.31 15 6 O -0.50 -9.83 13.48 -18.73 -0.25 -10.09 15 7 C -0.09 -2.09 9.92 -39.83 -0.40 -2.48 15 8 C -0.24 -5.77 7.20 -39.25 -0.28 -6.05 15 9 C 0.10 2.46 5.13 -106.81 -0.55 1.91 15 10 C -0.51 -13.15 8.61 -37.83 -0.33 -13.47 15 11 H 0.08 2.15 6.59 -52.49 -0.35 1.80 15 12 C 0.04 1.09 5.42 -17.34 -0.09 0.99 15 13 N -0.82 -21.61 13.66 55.55 0.76 -20.85 15 14 Si 1.07 24.48 24.89 -169.99 -4.23 20.25 15 15 H -0.28 -6.04 6.44 56.52 0.36 -5.67 15 16 H -0.26 -6.06 7.02 56.52 0.40 -5.67 15 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 18 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 19 H 0.06 1.29 7.96 -51.93 -0.41 0.88 15 20 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.04 0.81 8.05 -51.93 -0.42 0.39 15 22 H 0.06 1.32 6.51 -51.93 -0.34 0.98 15 23 H 0.10 1.94 8.06 -52.49 -0.42 1.51 15 24 H 0.36 5.17 9.06 45.56 0.41 5.59 15 25 H 0.10 2.00 8.06 -52.49 -0.42 1.58 15 26 H 0.11 2.60 4.44 -52.49 -0.23 2.36 15 27 H 0.29 7.34 8.73 -40.82 -0.36 6.98 15 LS Contribution 229.53 15.07 3.46 3.46 Total: -1.00 -27.71 229.53 -5.10 -32.81 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -2.22 Total: 5.32 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: -2.61 Total: -30.90 kcal Atomic # 7 Polarization: -21.61 SS G_CDS: 0.76 Total: -20.85 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.25 Total: -10.09 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.23 Total: 20.25 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.71 -5.10 -32.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238336809.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.726 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds