Wall clock time and date at job start Mon Mar 30 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47295 * 2 1 4 4 C 1.38902 * 119.68198 * 90.00093 * 3 2 1 5 5 C 1.36453 * 120.59508 * 180.02562 * 4 3 2 6 6 C 1.40726 * 119.94881 * 359.97438 * 5 4 3 7 7 C 1.41049 * 120.30271 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00162 * 206.12199 * 7 6 5 9 9 C 1.39925 * 120.00243 * 26.12364 * 7 6 5 10 10 N 1.30890 * 119.99697 * 16.45038 * 9 7 6 11 11 Si 1.86791 * 120.00261 * 196.44909 * 9 7 6 12 12 H 1.48504 * 109.47455 * 265.18540 * 11 9 7 13 13 H 1.48503 * 109.47106 * 25.18817 * 11 9 7 14 14 H 1.48508 * 109.47252 * 145.18625 * 11 9 7 15 15 C 1.41540 * 119.39093 * 0.27766 * 6 5 4 16 16 N 1.38732 * 120.29386 * 179.72130 * 15 6 5 17 17 C 1.38163 * 119.69054 * 270.02318 * 3 2 1 18 18 H 1.09000 * 109.46932 * 299.99925 * 1 2 3 19 19 H 1.09003 * 109.46837 * 59.99965 * 1 2 3 20 20 H 1.08998 * 109.46861 * 179.97438 * 1 2 3 21 21 H 1.09013 * 109.47164 * 240.00289 * 2 1 3 22 22 H 1.09001 * 109.47196 * 120.00916 * 2 1 3 23 23 H 1.07995 * 119.70296 * 0.02804 * 4 3 2 24 24 H 1.07995 * 120.02211 * 179.97438 * 5 4 3 25 25 H 0.96994 * 119.99915 * 180.02562 * 10 9 7 26 26 H 0.96993 * 120.00040 * 0.02562 * 16 15 6 27 27 H 0.97006 * 119.99557 * 180.02562 * 16 15 6 28 28 H 1.08006 * 119.98572 * 359.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2617 2.0693 1.2068 5 6 2.7160 3.3557 1.2285 6 6 2.9566 4.0363 0.0205 7 6 3.4268 5.3661 0.0343 8 1 3.2213 6.0202 -0.8002 9 6 4.1596 5.8378 1.1290 10 7 4.6847 4.9918 1.9785 11 14 4.3884 7.6749 1.3781 12 1 5.6789 8.0989 0.7781 13 1 3.2740 8.4058 0.7230 14 1 4.3941 7.9805 2.8314 15 6 2.7174 3.3761 -1.2084 16 7 2.9427 4.0312 -2.4103 17 6 2.2601 2.0661 -1.2002 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5140 0.8899 23 1 2.0788 1.5506 2.1362 24 1 2.8908 3.8512 2.1721 25 1 5.1923 5.3187 2.7376 26 1 3.2660 4.9457 -2.4110 27 1 2.7770 3.5747 -3.2500 28 1 2.0783 1.5520 -2.1325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238358844.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:13 Heat of formation + Delta-G solvation = 0.132323 kcal Electronic energy + Delta-G solvation = -11449.186548 eV Core-core repulsion = 9463.777326 eV Total energy + Delta-G solvation = -1985.409222 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.93510 -34.39074 -33.36932 -31.57616 -28.76165 -27.41117 -25.06505 -22.30266 -20.68696 -19.50543 -17.09455 -15.80271 -15.27738 -14.64454 -13.94960 -13.64456 -13.09809 -12.34691 -12.20808 -12.14334 -11.81639 -11.29543 -11.13671 -10.97856 -10.72165 -10.30374 -10.24639 -9.50671 -9.35159 -9.08858 -8.98837 -7.18745 -6.65021 -6.22952 -4.04604 2.86343 3.13268 3.17045 3.25928 3.32241 4.03331 4.75288 5.28748 5.71341 5.74642 5.81912 6.15339 6.35167 6.43620 6.48268 6.60424 6.73030 6.82145 7.11956 7.29669 7.37977 7.64006 7.82268 7.97606 8.28416 8.33687 8.60600 8.88173 8.93263 9.17242 9.24503 10.37724 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.055175 B = 0.010886 C = 0.009576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.353273 B = 2571.419882 C = 2923.327335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.161 4.161 4 C -0.141 4.141 5 C -0.136 4.136 6 C 0.060 3.940 7 C -0.466 4.466 8 H 0.070 0.930 9 C 0.075 3.925 10 N -0.805 5.805 11 Si 0.902 3.098 12 H -0.274 1.274 13 H -0.264 1.264 14 H -0.277 1.277 15 C 0.116 3.884 16 N -0.885 5.885 17 C -0.175 4.175 18 H 0.051 0.949 19 H 0.049 0.951 20 H 0.039 0.961 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.082 0.918 24 H 0.116 0.884 25 H 0.276 0.724 26 H 0.391 0.609 27 H 0.376 0.624 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 -2.271 -2.661 4.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.163 4.163 4 C -0.161 4.161 5 C -0.157 4.157 6 C 0.055 3.945 7 C -0.497 4.497 8 H 0.088 0.912 9 C -0.140 4.140 10 N -0.432 5.432 11 Si 0.727 3.273 12 H -0.199 1.199 13 H -0.188 1.188 14 H -0.203 1.203 15 C 0.015 3.985 16 N -0.427 5.427 17 C -0.199 4.199 18 H 0.070 0.930 19 H 0.068 0.932 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.134 0.866 25 H 0.087 0.913 26 H 0.219 0.781 27 H 0.201 0.799 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.957 -2.301 -2.366 4.431 hybrid contribution 0.325 1.014 -0.132 1.073 sum -2.632 -1.287 -2.498 3.850 Atomic orbital electron populations 1.21752 0.96697 0.99647 1.01747 1.20206 0.94614 0.94927 1.00283 1.18865 1.09279 0.95160 0.92956 1.20134 1.04824 0.96081 0.95086 1.20777 1.02472 0.94254 0.98212 1.17235 0.94379 0.93554 0.89315 1.19123 1.30715 0.96545 1.03319 0.91215 1.25749 0.93743 0.99323 0.95231 1.69851 1.25536 1.35779 1.12015 0.86411 0.79173 0.83447 0.78240 1.19937 1.18760 1.20256 1.17942 1.02456 0.91521 0.86608 1.41862 1.79301 1.17221 1.04285 1.19812 1.09985 0.94145 0.95920 0.92998 0.93185 0.94146 0.93211 0.92952 0.89947 0.86623 0.91330 0.78113 0.79900 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.89 37.16 0.37 -1.89 15 2 C -0.06 -1.14 6.05 -27.88 -0.17 -1.31 15 3 C -0.16 -3.62 5.15 -104.40 -0.54 -4.16 15 4 C -0.14 -3.43 9.61 -39.98 -0.38 -3.82 15 5 C -0.14 -3.65 8.62 -39.29 -0.34 -3.99 15 6 C 0.06 1.61 5.57 -106.63 -0.59 1.02 15 7 C -0.47 -12.39 8.49 -37.89 -0.32 -12.72 15 8 H 0.07 1.76 6.70 -52.49 -0.35 1.41 15 9 C 0.07 1.92 5.15 -17.32 -0.09 1.84 15 10 N -0.80 -21.48 10.98 55.55 0.61 -20.87 15 11 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 15 12 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 13 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 15 C 0.12 2.83 6.79 -83.29 -0.57 2.27 15 16 N -0.89 -18.14 8.98 32.72 0.29 -17.85 15 17 C -0.18 -4.02 9.52 -39.42 -0.38 -4.39 15 18 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 19 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.05 0.85 8.08 -51.92 -0.42 0.43 15 22 H 0.05 0.91 8.08 -51.93 -0.42 0.49 15 23 H 0.08 1.83 8.06 -52.49 -0.42 1.41 15 24 H 0.12 3.21 6.23 -52.49 -0.33 2.88 15 25 H 0.28 6.75 8.30 -40.82 -0.34 6.41 15 26 H 0.39 7.83 7.06 -40.82 -0.29 7.54 15 27 H 0.38 6.48 8.84 -40.82 -0.36 6.11 15 28 H 0.08 1.75 8.06 -52.48 -0.42 1.32 15 LS Contribution 239.56 15.07 3.61 3.61 Total: -1.00 -28.16 239.56 -6.94 -35.10 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.41 Total: 13.08 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -3.01 Total: -27.16 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.90 Total: -38.71 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.16 -6.94 -35.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238358844.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.228 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds