Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47295 * 2 1 4 4 C 1.38902 * 119.68198 * 90.00093 * 3 2 1 5 5 C 1.36453 * 120.59508 * 180.02562 * 4 3 2 6 6 C 1.40726 * 119.94881 * 359.97438 * 5 4 3 7 7 C 1.41049 * 120.30271 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00162 * 206.12199 * 7 6 5 9 9 C 1.39925 * 120.00243 * 26.12364 * 7 6 5 10 10 N 1.30890 * 119.99697 * 16.45038 * 9 7 6 11 11 Si 1.86791 * 120.00261 * 196.44909 * 9 7 6 12 12 H 1.48504 * 109.47455 * 265.18540 * 11 9 7 13 13 H 1.48503 * 109.47106 * 25.18817 * 11 9 7 14 14 H 1.48508 * 109.47252 * 145.18625 * 11 9 7 15 15 C 1.41540 * 119.39093 * 0.27766 * 6 5 4 16 16 N 1.38732 * 120.29386 * 179.72130 * 15 6 5 17 17 C 1.38163 * 119.69054 * 270.02318 * 3 2 1 18 18 H 1.09000 * 109.46932 * 299.99925 * 1 2 3 19 19 H 1.09003 * 109.46837 * 59.99965 * 1 2 3 20 20 H 1.08998 * 109.46861 * 179.97438 * 1 2 3 21 21 H 1.09013 * 109.47164 * 240.00289 * 2 1 3 22 22 H 1.09001 * 109.47196 * 120.00916 * 2 1 3 23 23 H 1.07995 * 119.70296 * 0.02804 * 4 3 2 24 24 H 1.07995 * 120.02211 * 179.97438 * 5 4 3 25 25 H 0.96994 * 119.99915 * 180.02562 * 10 9 7 26 26 H 0.96993 * 120.00040 * 0.02562 * 16 15 6 27 27 H 0.97006 * 119.99557 * 180.02562 * 16 15 6 28 28 H 1.08006 * 119.98572 * 359.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2617 2.0693 1.2068 5 6 2.7160 3.3557 1.2285 6 6 2.9566 4.0363 0.0205 7 6 3.4268 5.3661 0.0343 8 1 3.2213 6.0202 -0.8002 9 6 4.1596 5.8378 1.1290 10 7 4.6847 4.9918 1.9785 11 14 4.3884 7.6749 1.3781 12 1 5.6789 8.0989 0.7781 13 1 3.2740 8.4058 0.7230 14 1 4.3941 7.9805 2.8314 15 6 2.7174 3.3761 -1.2084 16 7 2.9427 4.0312 -2.4103 17 6 2.2601 2.0661 -1.2002 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8901 22 1 1.8934 -0.5140 0.8899 23 1 2.0788 1.5506 2.1362 24 1 2.8908 3.8512 2.1721 25 1 5.1923 5.3187 2.7376 26 1 3.2660 4.9457 -2.4110 27 1 2.7770 3.5747 -3.2500 28 1 2.0783 1.5520 -2.1325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238358844.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -16.507982 kcal Electronic energy + Delta-G solvation = -11449.908126 eV Core-core repulsion = 9463.777326 eV Total energy + Delta-G solvation = -1986.130800 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.77398 -36.11022 -35.20627 -33.26699 -30.53832 -29.25451 -26.83322 -23.94278 -22.54755 -21.25425 -19.02206 -17.57851 -17.06590 -16.39941 -15.74927 -15.15979 -14.64075 -14.15132 -13.90817 -13.86962 -13.57776 -12.95284 -12.78862 -12.69986 -12.35301 -11.94317 -11.73362 -11.35795 -11.15187 -10.93763 -10.81924 -9.09304 -8.54633 -8.06944 -6.00910 1.06249 1.37662 1.40155 1.51242 1.55860 2.26450 2.85636 3.62012 3.84991 4.34039 4.37389 4.64640 4.75601 4.79754 5.04149 5.12167 5.17085 5.24631 5.42208 5.48291 5.53392 5.77403 5.93884 6.08545 6.38534 6.44712 6.72185 6.97404 7.05152 7.32839 7.55214 8.50654 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.055175 B = 0.010886 C = 0.009576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.353273 B = 2571.419882 C = 2923.327335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.149 4.149 4 C -0.161 4.161 5 C -0.159 4.159 6 C 0.018 3.982 7 C -0.495 4.495 8 H 0.074 0.926 9 C 0.029 3.971 10 N -0.843 5.843 11 Si 0.977 3.023 12 H -0.266 1.266 13 H -0.260 1.260 14 H -0.273 1.273 15 C 0.111 3.889 16 N -0.873 5.873 17 C -0.187 4.187 18 H 0.042 0.958 19 H 0.047 0.953 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.280 0.720 26 H 0.393 0.607 27 H 0.394 0.606 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 -2.879 -3.715 5.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.181 4.181 5 C -0.180 4.180 6 C 0.013 3.987 7 C -0.526 4.526 8 H 0.092 0.908 9 C -0.182 4.182 10 N -0.472 5.472 11 Si 0.799 3.201 12 H -0.191 1.191 13 H -0.184 1.184 14 H -0.198 1.198 15 C 0.008 3.992 16 N -0.415 5.415 17 C -0.210 4.210 18 H 0.061 0.939 19 H 0.066 0.934 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.090 0.910 26 H 0.221 0.779 27 H 0.222 0.778 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.552 -2.920 -3.459 5.754 hybrid contribution 0.459 1.058 0.132 1.161 sum -3.092 -1.862 -3.327 4.909 Atomic orbital electron populations 1.21690 0.94763 1.01643 1.01242 1.20290 0.96188 0.91996 1.01623 1.19407 1.06532 0.97117 0.92046 1.20344 1.05472 0.95577 0.96696 1.20765 1.04053 0.95544 0.97606 1.17581 0.96163 0.94495 0.90437 1.19379 1.31821 0.97020 1.04415 0.90785 1.26602 0.93058 1.03919 0.94637 1.69936 1.26559 1.37891 1.12770 0.85280 0.79239 0.77440 0.78181 1.19100 1.18375 1.19821 1.18180 1.01647 0.92258 0.87069 1.41772 1.78466 1.17284 1.04013 1.20184 1.09684 0.93792 0.97355 0.93861 0.93395 0.90935 0.91461 0.92073 0.88667 0.88875 0.90962 0.77894 0.77805 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.89 71.98 0.71 -3.19 15 2 C -0.06 -2.12 6.05 29.85 0.18 -1.94 15 3 C -0.15 -6.49 5.15 -19.72 -0.10 -6.60 15 4 C -0.16 -7.85 9.61 22.01 0.21 -7.64 15 5 C -0.16 -8.77 8.62 22.46 0.19 -8.58 15 6 C 0.02 0.98 5.57 -21.17 -0.12 0.87 15 7 C -0.49 -26.88 8.49 23.37 0.20 -26.69 15 8 H 0.07 3.78 6.70 -2.91 -0.02 3.76 15 9 C 0.03 1.54 5.15 85.24 0.44 1.98 15 10 N -0.84 -46.45 10.98 21.83 0.24 -46.21 15 11 Si 0.98 39.76 29.59 68.60 2.03 41.79 15 12 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 13 H -0.26 -10.29 7.11 99.48 0.71 -9.59 15 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 15 C 0.11 5.37 6.79 38.99 0.26 5.64 15 16 N -0.87 -34.67 8.98 -50.40 -0.45 -35.12 15 17 C -0.19 -8.22 9.52 22.37 0.21 -8.01 15 18 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 19 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.07 2.03 8.08 -2.38 -0.02 2.01 15 22 H 0.06 1.94 8.08 -2.39 -0.02 1.92 15 23 H 0.10 4.25 8.06 -2.91 -0.02 4.22 15 24 H 0.09 5.45 6.23 -2.91 -0.02 5.43 15 25 H 0.28 14.12 8.30 -92.71 -0.77 13.35 15 26 H 0.39 15.44 7.06 -92.71 -0.65 14.79 15 27 H 0.39 12.69 8.84 -92.70 -0.82 11.87 15 28 H 0.11 4.28 8.06 -2.91 -0.02 4.26 15 Total: -1.00 -60.91 239.56 3.71 -57.20 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -0.30 Total: 36.49 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 2.19 Total: -54.15 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -0.21 Total: -81.33 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -60.91 3.71 -57.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238358844.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.690 kcal (2) G-P(sol) polarization free energy of solvation -60.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds