Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36169 * 126.20382 * 2 1 4 4 N 1.30095 * 109.55985 * 179.97438 * 3 2 1 5 5 C 1.35764 * 109.31970 * 359.77145 * 4 3 2 6 6 C 1.43194 * 126.38129 * 180.27518 * 5 4 3 7 7 N 4.72115 * 154.19590 * 179.45274 * 2 1 3 8 8 C 1.36744 * 126.20821 * 179.97438 * 2 1 3 9 9 N 1.37729 * 126.85338 * 359.97438 * 8 2 1 10 10 C 1.36810 * 119.99894 * 353.26694 * 9 8 2 11 11 H 1.07998 * 120.00235 * 335.77103 * 10 9 8 12 12 C 1.38758 * 120.00052 * 155.50012 * 10 9 8 13 13 N 1.31585 * 119.99796 * 0.27535 * 12 10 9 14 14 Si 1.86794 * 120.00315 * 180.27463 * 12 10 9 15 15 H 1.48503 * 109.46982 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47137 * 119.99906 * 14 12 10 17 17 H 1.48495 * 109.47367 * 239.99780 * 14 12 10 18 18 H 1.09001 * 109.46612 * 263.83880 * 1 2 3 19 19 H 1.08996 * 109.47203 * 23.84234 * 1 2 3 20 20 H 1.09001 * 109.46593 * 143.84556 * 1 2 3 21 21 H 1.08004 * 125.21309 * 359.97024 * 3 2 1 22 22 H 0.97002 * 120.00189 * 173.27016 * 9 8 2 23 23 H 0.97003 * 120.00153 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0988 0.0000 4 7 3.5157 0.7261 0.0005 5 6 3.5791 -0.6300 0.0060 6 6 4.7703 -1.4246 0.0139 7 7 5.7154 -2.0550 0.0196 8 6 2.2728 -1.1034 0.0005 9 7 1.8715 -2.4209 0.0016 10 6 0.5467 -2.7323 0.1412 11 1 -0.1230 -2.0381 0.6269 12 6 0.0622 -3.9378 -0.3463 13 7 0.8781 -4.7836 -0.9381 14 14 -1.7481 -4.3597 -0.1626 15 1 -2.4470 -3.2494 0.5331 16 1 -2.3492 -4.5576 -1.5061 17 1 -1.8876 -5.6073 0.6307 18 1 -0.3632 -0.1103 1.0218 19 1 -0.3633 0.9399 -0.4154 20 1 -0.3632 -0.8298 -0.6063 21 1 1.9251 2.1225 -0.0005 22 1 2.5282 -3.1280 -0.0966 23 1 0.5394 -5.6262 -1.2792 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238524669.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = 92.260829 kcal Electronic energy + Delta-G solvation = -11326.276812 eV Core-core repulsion = 9175.896327 eV Total energy + Delta-G solvation = -2150.380485 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.96907 -35.67661 -35.41836 -32.96940 -31.98269 -27.90629 -26.65797 -24.43755 -22.04931 -20.05265 -18.24846 -17.53090 -15.72246 -15.09002 -14.79179 -14.52541 -13.81969 -13.27829 -12.85820 -12.46507 -11.99452 -11.91829 -11.75187 -11.60694 -11.54022 -10.95352 -10.60949 -9.96131 -9.34889 -9.10497 -8.53573 -6.79146 -6.71348 -4.13878 2.70455 3.00999 3.04627 3.05734 3.29280 3.37169 3.67537 3.85997 4.60121 4.83128 4.99099 5.04270 5.40299 5.66142 5.77166 6.09388 6.15232 6.82825 6.93147 7.17343 7.56394 7.98251 8.48073 8.62594 8.75899 9.03459 9.27754 10.39649 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.040976 B = 0.013097 C = 0.010090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.170687 B = 2137.380858 C = 2774.387480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.496 5.496 3 C 0.145 3.855 4 N -0.432 5.432 5 C -0.130 4.130 6 C 0.328 3.672 7 N -0.486 5.486 8 C 0.369 3.631 9 N -0.531 5.531 10 C -0.343 4.343 11 H 0.105 0.895 12 C 0.035 3.965 13 N -0.875 5.875 14 Si 0.928 3.072 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.277 1.277 18 H 0.061 0.939 19 H 0.072 0.928 20 H 0.102 0.898 21 H 0.198 0.802 22 H 0.412 0.588 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 6.600 1.136 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.197 5.197 3 C -0.138 4.138 4 N -0.150 5.150 5 C -0.260 4.260 6 C 0.016 3.984 7 N -0.168 5.168 8 C 0.135 3.865 9 N -0.146 5.146 10 C -0.473 4.473 11 H 0.122 0.878 12 C -0.171 4.171 13 N -0.510 5.510 14 Si 0.753 3.247 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.203 1.203 18 H 0.079 0.921 19 H 0.091 0.909 20 H 0.120 0.880 21 H 0.215 0.785 22 H 0.251 0.749 23 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.233 5.853 1.069 7.924 hybrid contribution -1.862 -0.831 0.006 2.039 sum -7.095 5.022 1.075 8.759 Atomic orbital electron populations 1.22186 0.77119 1.04026 1.02856 1.44469 1.06707 1.04944 1.63574 1.24123 0.84744 0.92080 1.12869 1.70023 1.19310 1.09646 1.16005 1.14719 0.84667 0.88915 1.37739 1.24001 0.91221 0.92087 0.91051 1.81120 1.10000 1.09519 1.16124 1.18338 0.88286 0.82498 0.97424 1.39890 1.08994 0.99669 1.66009 1.19833 0.84782 1.05317 1.37338 0.87777 1.25440 1.00325 0.96212 0.95169 1.69751 1.35808 1.09647 1.35817 0.85844 0.81350 0.79077 0.78379 1.19018 1.20267 1.20289 0.92051 0.90896 0.87982 0.78509 0.74944 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 9.31 59.85 0.56 1.71 14 2 N -0.50 -8.97 3.17 -124.34 -0.39 -9.36 14 3 C 0.15 2.46 12.52 -89.67 -1.12 1.34 14 4 N -0.43 -8.89 11.30 -11.52 -0.13 -9.02 14 5 C -0.13 -2.90 6.97 -83.94 -0.58 -3.49 14 6 C 0.33 7.61 15.67 -22.47 -0.35 7.26 14 7 N -0.49 -11.58 18.54 41.84 0.78 -10.80 14 8 C 0.37 8.01 7.73 -152.46 -1.18 6.83 14 9 N -0.53 -12.39 5.25 -10.58 -0.06 -12.44 14 10 C -0.34 -7.86 8.12 -15.14 -0.12 -7.98 14 11 H 0.10 2.17 4.84 -52.49 -0.25 1.91 14 12 C 0.04 0.83 5.50 -17.47 -0.10 0.73 14 13 N -0.87 -22.28 13.21 55.49 0.73 -21.55 14 14 Si 0.93 17.86 29.55 -169.99 -5.02 12.83 14 15 H -0.27 -4.80 7.11 56.52 0.40 -4.40 14 16 H -0.28 -5.38 7.11 56.52 0.40 -4.98 14 17 H -0.28 -5.46 7.11 56.52 0.40 -5.05 14 18 H 0.06 0.82 7.73 -51.93 -0.40 0.42 14 19 H 0.07 0.77 8.13 -51.93 -0.42 0.35 14 20 H 0.10 1.65 5.96 -51.93 -0.31 1.34 14 21 H 0.20 2.34 8.06 -52.48 -0.42 1.92 14 22 H 0.41 10.22 8.05 -40.82 -0.33 9.89 14 23 H 0.28 6.67 8.31 -40.82 -0.34 6.33 14 LS Contribution 219.23 15.07 3.30 3.30 Total: -1.00 -27.94 219.23 -4.96 -32.90 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -1.27 Total: 7.73 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.90 Total: 6.40 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 0.93 Total: -63.17 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.83 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.94 -4.96 -32.90 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524669.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.162 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds