Wall clock time and date at job start Mon Mar 30 2020 02:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36169 * 126.20382 * 2 1 4 4 N 1.30095 * 109.55985 * 179.97438 * 3 2 1 5 5 C 1.35764 * 109.31970 * 359.77145 * 4 3 2 6 6 C 1.43194 * 126.38129 * 180.27518 * 5 4 3 7 7 N 4.72115 * 154.19590 * 179.45274 * 2 1 3 8 8 C 1.36744 * 126.20821 * 179.97438 * 2 1 3 9 9 N 1.37729 * 126.85338 * 359.97438 * 8 2 1 10 10 C 1.36810 * 119.99894 * 353.26694 * 9 8 2 11 11 H 1.07998 * 120.00235 * 335.77103 * 10 9 8 12 12 C 1.38758 * 120.00052 * 155.50012 * 10 9 8 13 13 N 1.31585 * 119.99796 * 0.27535 * 12 10 9 14 14 Si 1.86794 * 120.00315 * 180.27463 * 12 10 9 15 15 H 1.48503 * 109.46982 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47137 * 119.99906 * 14 12 10 17 17 H 1.48495 * 109.47367 * 239.99780 * 14 12 10 18 18 H 1.09001 * 109.46612 * 263.83880 * 1 2 3 19 19 H 1.08996 * 109.47203 * 23.84234 * 1 2 3 20 20 H 1.09001 * 109.46593 * 143.84556 * 1 2 3 21 21 H 1.08004 * 125.21309 * 359.97024 * 3 2 1 22 22 H 0.97002 * 120.00189 * 173.27016 * 9 8 2 23 23 H 0.97003 * 120.00153 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0988 0.0000 4 7 3.5157 0.7261 0.0005 5 6 3.5791 -0.6300 0.0060 6 6 4.7703 -1.4246 0.0139 7 7 5.7154 -2.0550 0.0196 8 6 2.2728 -1.1034 0.0005 9 7 1.8715 -2.4209 0.0016 10 6 0.5467 -2.7323 0.1412 11 1 -0.1230 -2.0381 0.6269 12 6 0.0622 -3.9378 -0.3463 13 7 0.8781 -4.7836 -0.9381 14 14 -1.7481 -4.3597 -0.1626 15 1 -2.4470 -3.2494 0.5331 16 1 -2.3492 -4.5576 -1.5061 17 1 -1.8876 -5.6073 0.6307 18 1 -0.3632 -0.1103 1.0218 19 1 -0.3633 0.9399 -0.4154 20 1 -0.3632 -0.8298 -0.6063 21 1 1.9251 2.1225 -0.0005 22 1 2.5282 -3.1280 -0.0966 23 1 0.5394 -5.6262 -1.2792 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238524669.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:48 Heat of formation + Delta-G solvation = 75.341728 kcal Electronic energy + Delta-G solvation = -11327.010479 eV Core-core repulsion = 9175.896327 eV Total energy + Delta-G solvation = -2151.114152 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.50837 -37.35295 -37.22614 -34.44065 -33.69102 -29.54348 -28.03131 -26.09740 -23.64185 -21.57449 -19.92697 -19.12324 -17.34382 -16.57210 -16.41230 -16.08103 -15.33859 -14.79609 -14.43918 -13.87534 -13.68530 -13.55332 -13.41225 -13.21031 -13.12644 -12.49195 -12.04727 -11.55676 -10.88493 -10.78093 -10.05897 -8.51055 -8.41276 -5.91810 1.01396 1.46512 1.50540 1.59161 1.82648 1.84461 1.94951 2.28784 2.87015 3.11172 3.36054 3.41602 4.30044 4.40327 4.55039 4.68991 4.99210 5.18148 5.34004 5.55134 5.88396 6.56922 6.70389 6.85052 7.20817 7.30928 7.57323 8.68409 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.040976 B = 0.013097 C = 0.010090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.170687 B = 2137.380858 C = 2774.387480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.493 5.493 3 C 0.188 3.812 4 N -0.470 5.470 5 C -0.152 4.152 6 C 0.327 3.673 7 N -0.512 5.512 8 C 0.358 3.642 9 N -0.553 5.553 10 C -0.344 4.344 11 H 0.127 0.873 12 C -0.018 4.018 13 N -0.926 5.926 14 Si 0.995 3.005 15 H -0.239 1.239 16 H -0.281 1.281 17 H -0.287 1.287 18 H 0.075 0.925 19 H 0.122 0.878 20 H 0.082 0.918 21 H 0.258 0.742 22 H 0.398 0.602 23 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.343 9.048 1.588 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.193 5.193 3 C -0.097 4.097 4 N -0.188 5.188 5 C -0.280 4.280 6 C 0.017 3.983 7 N -0.194 5.194 8 C 0.123 3.877 9 N -0.167 5.167 10 C -0.473 4.473 11 H 0.144 0.856 12 C -0.219 4.219 13 N -0.564 5.564 14 Si 0.818 3.182 15 H -0.162 1.162 16 H -0.207 1.207 17 H -0.213 1.213 18 H 0.093 0.907 19 H 0.141 0.859 20 H 0.101 0.899 21 H 0.273 0.727 22 H 0.233 0.767 23 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.517 8.349 1.538 11.339 hybrid contribution -1.140 -1.381 -0.124 1.796 sum -8.658 6.967 1.414 11.203 Atomic orbital electron populations 1.22456 0.74540 1.06013 1.03822 1.44881 1.08288 1.03945 1.62137 1.25388 0.83489 0.93744 1.07094 1.70063 1.21480 1.08414 1.18893 1.14916 0.84484 0.89974 1.38654 1.24404 0.91407 0.91849 0.90623 1.81086 1.10831 1.10152 1.17334 1.18469 0.88929 0.82896 0.97382 1.39926 1.08949 1.00056 1.67811 1.20342 0.84775 1.05586 1.36560 0.85621 1.26377 1.04371 0.96201 0.94992 1.69894 1.37854 1.10322 1.38315 0.84822 0.76437 0.78988 0.77965 1.16180 1.20737 1.21327 0.90653 0.85943 0.89941 0.72671 0.76702 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.74 9.31 127.77 1.19 2.93 14 2 N -0.49 -16.08 3.17 -547.29 -1.74 -17.82 14 3 C 0.19 5.49 12.52 180.02 2.25 7.74 14 4 N -0.47 -18.27 11.30 -190.36 -2.15 -20.42 14 5 C -0.15 -6.71 6.97 39.95 0.28 -6.43 14 6 C 0.33 15.53 15.67 88.33 1.38 16.91 14 7 N -0.51 -25.05 18.54 19.00 0.35 -24.70 14 8 C 0.36 15.17 7.73 132.10 1.02 16.19 14 9 N -0.55 -26.03 5.25 -187.38 -0.98 -27.01 14 10 C -0.34 -15.52 8.12 84.04 0.68 -14.84 14 11 H 0.13 4.94 4.84 -2.91 -0.01 4.93 14 12 C -0.02 -0.86 5.50 84.85 0.47 -0.39 14 13 N -0.93 -48.62 13.21 21.64 0.29 -48.33 14 14 Si 0.99 36.04 29.55 68.60 2.03 38.06 14 15 H -0.24 -7.50 7.11 99.48 0.71 -6.79 14 16 H -0.28 -10.29 7.11 99.48 0.71 -9.58 14 17 H -0.29 -10.75 7.11 99.48 0.71 -10.05 14 18 H 0.07 1.65 7.73 -2.39 -0.02 1.63 14 19 H 0.12 1.77 8.13 -2.39 -0.02 1.75 14 20 H 0.08 2.38 5.96 -2.39 -0.01 2.37 14 21 H 0.26 4.19 8.06 -2.91 -0.02 4.16 14 22 H 0.40 20.54 8.05 -92.71 -0.75 19.80 14 23 H 0.27 13.69 8.31 -92.71 -0.77 12.92 14 Total: -1.00 -62.54 219.23 5.59 -56.96 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.51 Total: 21.14 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 7.28 Total: 22.12 kcal Atomic # 7 Polarization: -134.04 SS G_CDS: -4.23 Total: -138.28 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.06 kcal Total: -62.54 5.59 -56.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524669.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.300 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds