Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38968 * 120.22401 * 2 1 4 4 C 1.38139 * 118.59339 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.51091 * 180.02562 * 4 3 2 6 6 C 1.40661 * 118.98112 * 359.97438 * 4 3 2 7 7 C 1.41404 * 119.82797 * 179.97438 * 6 4 3 8 8 H 1.07993 * 120.00105 * 6.66279 * 7 6 4 9 9 C 1.40033 * 119.99794 * 186.66128 * 7 6 4 10 10 N 1.30740 * 119.99904 * 176.27537 * 9 7 6 11 11 Si 1.86804 * 120.00219 * 356.27863 * 9 7 6 12 12 H 1.48500 * 109.47354 * 179.97438 * 11 9 7 13 13 H 1.48498 * 109.47234 * 299.99803 * 11 9 7 14 14 H 1.48507 * 109.47101 * 59.99941 * 11 9 7 15 15 N 1.33610 * 120.34223 * 0.26001 * 6 4 3 16 16 C 1.31421 * 121.51337 * 359.47192 * 15 6 4 17 17 C 1.50706 * 119.49555 * 180.26639 * 16 15 6 18 18 H 1.09000 * 109.46944 * 89.99874 * 1 2 3 19 19 H 1.09000 * 109.46873 * 210.00158 * 1 2 3 20 20 H 1.08993 * 109.46795 * 329.99926 * 1 2 3 21 21 H 1.07997 * 120.69990 * 0.02562 * 3 2 1 22 22 H 1.09001 * 109.47319 * 269.97277 * 5 4 3 23 23 H 1.09001 * 109.47112 * 29.97911 * 5 4 3 24 24 H 1.09004 * 109.47203 * 149.97491 * 5 4 3 25 25 H 0.96993 * 119.99954 * 355.17514 * 10 9 7 26 26 H 1.08996 * 109.47022 * 270.26144 * 17 16 15 27 27 H 1.09000 * 109.46481 * 30.26065 * 17 16 15 28 28 H 1.09002 * 109.47027 * 150.25373 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2008 0.0000 4 6 3.5874 1.1615 -0.0005 5 6 4.3891 2.4375 0.0000 6 6 4.2337 -0.0879 -0.0005 7 6 5.6464 -0.1490 -0.0016 8 1 6.2261 0.7557 0.1060 9 6 6.2937 -1.3828 -0.1423 10 7 7.5980 -1.4319 -0.2165 11 14 5.2935 -2.9584 -0.2240 12 1 6.2085 -4.1184 -0.3733 13 1 4.5031 -3.1083 1.0242 14 1 4.3737 -2.9010 -1.3885 15 7 3.5196 -1.2172 -0.0052 16 6 2.2055 -1.1990 0.0004 17 6 1.4454 -2.5003 0.0008 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8899 0.5138 21 1 1.6817 2.1446 0.0004 22 1 4.5825 2.7456 -1.0275 23 1 3.8289 3.2184 0.5143 24 1 5.3361 2.2714 0.5138 25 1 8.1135 -0.6108 -0.2447 26 1 1.2619 -2.8142 -1.0267 27 1 2.0309 -3.2628 0.5146 28 1 0.4939 -2.3652 0.5150 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238538183.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = -21.911679 kcal Electronic energy + Delta-G solvation = -11739.973332 eV Core-core repulsion = 9753.608210 eV Total energy + Delta-G solvation = -1986.365122 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.81247 -36.22851 -34.69949 -33.98849 -30.39566 -29.52672 -27.03563 -24.79551 -23.36661 -20.96154 -20.34853 -17.42882 -16.64287 -15.74223 -15.54111 -15.00151 -14.63762 -14.16506 -13.78368 -13.76000 -13.53517 -13.43041 -13.19509 -12.95873 -12.55520 -12.29259 -12.19060 -11.75427 -11.30870 -11.23201 -10.11636 -9.65005 -9.40082 -9.18966 -6.71764 0.66024 0.80519 1.58175 1.70053 2.04095 2.46333 2.63796 3.51118 3.84627 4.13032 4.35484 4.42193 4.55942 4.65560 4.77448 4.81351 4.85659 4.97689 5.00342 5.07258 5.15620 5.22501 5.43935 5.47988 5.67861 5.77441 5.95674 6.09271 6.46726 6.71297 7.63226 7.98631 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.036105 B = 0.018222 C = 0.012255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.327528 B = 1536.228352 C = 2284.158195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.262 4.262 3 C -0.045 4.045 4 C -0.254 4.254 5 C -0.075 4.075 6 C 0.231 3.769 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.013 3.987 10 N -0.836 5.836 11 Si 1.193 2.807 12 H -0.336 1.336 13 H -0.291 1.291 14 H -0.294 1.294 15 N -0.594 5.594 16 C 0.138 3.862 17 C -0.105 4.105 18 H 0.063 0.937 19 H 0.074 0.926 20 H 0.065 0.935 21 H 0.139 0.861 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.279 0.721 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 2.016 0.177 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.267 4.267 3 C -0.069 4.069 4 C -0.257 4.257 5 C -0.132 4.132 6 C 0.106 3.894 7 C -0.545 4.545 8 H 0.093 0.907 9 C -0.202 4.202 10 N -0.460 5.460 11 Si 1.028 2.972 12 H -0.270 1.270 13 H -0.220 1.220 14 H -0.222 1.222 15 N -0.313 5.313 16 C -0.001 4.001 17 C -0.162 4.162 18 H 0.082 0.918 19 H 0.092 0.908 20 H 0.084 0.916 21 H 0.157 0.843 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.245 -0.267 0.097 11.249 hybrid contribution 0.342 2.764 0.079 2.786 sum -10.903 2.497 0.176 11.186 Atomic orbital electron populations 1.20477 0.88603 1.02747 1.01806 1.20468 0.98126 0.92401 1.15663 1.21204 0.92489 0.98200 0.94990 1.20800 0.95081 0.95662 1.14204 1.20327 0.98554 0.93539 1.00821 1.18727 0.93642 0.88154 0.88926 1.20814 0.91425 0.96550 1.45691 0.90745 1.28436 0.96327 1.07098 0.88380 1.70676 1.07223 1.33458 1.34638 0.81243 0.69316 0.68021 0.78579 1.27011 1.21999 1.22234 1.66033 1.08768 1.29877 1.26658 1.21433 0.89153 0.96561 0.92958 1.20881 0.99789 0.92142 1.03349 0.91817 0.90768 0.91578 0.84319 0.92783 0.90814 0.93829 0.90997 0.89910 0.92374 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 9.61 71.24 0.68 -1.39 15 2 C -0.26 -9.93 5.92 -19.56 -0.12 -10.05 15 3 C -0.05 -1.77 9.52 22.42 0.21 -1.56 15 4 C -0.25 -11.72 5.96 -19.30 -0.11 -11.84 15 5 C -0.08 -2.97 9.56 71.23 0.68 -2.29 15 6 C 0.23 12.41 6.42 40.24 0.26 12.67 15 7 C -0.51 -29.39 9.14 23.49 0.21 -29.17 15 8 H 0.07 4.28 6.18 -2.91 -0.02 4.26 15 9 C 0.01 0.77 5.52 85.29 0.47 1.24 15 10 N -0.84 -48.36 13.65 21.84 0.30 -48.06 15 11 Si 1.19 61.20 25.46 68.60 1.75 62.94 15 12 H -0.34 -16.84 7.11 99.48 0.71 -16.13 15 13 H -0.29 -14.81 6.97 99.48 0.69 -14.11 15 14 H -0.29 -14.96 6.92 99.48 0.69 -14.28 15 15 N -0.59 -30.77 4.45 -177.21 -0.79 -31.56 15 16 C 0.14 5.96 6.78 42.75 0.29 6.25 15 17 C -0.10 -3.44 9.76 71.24 0.70 -2.75 15 18 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 19 H 0.07 1.68 5.94 -2.39 -0.01 1.67 15 20 H 0.07 1.51 8.09 -2.39 -0.02 1.49 15 21 H 0.14 4.38 8.06 -2.91 -0.02 4.36 15 22 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.07 2.38 8.10 -2.39 -0.02 2.36 15 24 H 0.04 1.85 6.27 -2.38 -0.01 1.83 15 25 H 0.28 15.59 8.72 -92.71 -0.81 14.78 15 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 28 H 0.10 2.63 5.92 -2.39 -0.01 2.61 15 Total: -1.00 -64.40 232.59 5.61 -58.78 By element: Atomic # 1 Polarization: -4.30 SS G_CDS: 1.08 Total: -3.22 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.28 Total: -38.89 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -0.49 Total: -79.62 kcal Atomic # 14 Polarization: 61.20 SS G_CDS: 1.75 Total: 62.94 kcal Total: -64.40 5.61 -58.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238538183.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.872 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds