Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36549 * 125.98274 * 260.24348 * 3 2 1 5 5 C 1.40474 * 106.70365 * 179.91213 * 4 3 2 6 6 C 1.35045 * 107.11178 * 0.35100 * 5 4 3 7 7 C 1.50699 * 125.61980 * 179.80306 * 6 5 4 8 8 H 1.08998 * 109.47040 * 339.99780 * 7 6 5 9 9 N 1.46905 * 109.47184 * 220.00263 * 7 6 5 10 10 C 1.50700 * 109.47144 * 100.00216 * 7 6 5 11 11 H 1.07995 * 120.00202 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99779 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00224 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99864 * 179.97438 * 12 10 7 15 15 H 1.48503 * 109.46996 * 59.99790 * 14 12 10 16 16 H 1.48499 * 109.47156 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47165 * 299.99978 * 14 12 10 18 18 O 1.34050 * 108.76552 * 359.78335 * 6 5 4 19 19 H 1.08000 * 126.65156 * 0.02562 * 4 3 2 20 20 H 1.08005 * 126.44362 * 180.13547 * 5 4 3 21 21 H 1.00899 * 110.99739 * 176.04773 * 9 7 6 22 22 H 1.00894 * 110.99865 * 299.99901 * 9 7 6 23 23 H 0.96997 * 120.00297 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3702 0.1882 1.0890 5 6 4.6962 0.1082 0.6322 6 6 4.6452 -0.1138 -0.6989 7 6 5.8362 -0.2650 -1.6097 8 1 6.7148 0.1712 -1.1344 9 7 5.5727 0.4257 -2.8792 10 6 6.0829 -1.7277 -1.8755 11 1 5.4417 -2.4733 -1.4291 12 6 7.1280 -2.1141 -2.6876 13 7 7.9092 -1.2062 -3.2308 14 14 7.4342 -3.9273 -3.0165 15 1 6.2375 -4.5219 -3.6643 16 1 8.6078 -4.0762 -3.9141 17 1 7.7004 -4.6251 -1.7330 18 8 3.3606 -0.1781 -1.0765 19 1 3.0477 0.3624 2.1049 20 1 5.5886 0.2091 1.2321 21 1 6.3808 0.3940 -3.4826 22 1 4.7623 0.0394 -3.3395 23 1 8.6442 -1.4780 -3.8024 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238591024.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = 22.152816 kcal Electronic energy + Delta-G solvation = -11125.706788 eV Core-core repulsion = 8939.993441 eV Total energy + Delta-G solvation = -2185.713347 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.54278 -37.77892 -36.72953 -34.05015 -33.41495 -30.67356 -28.05180 -25.21880 -22.83924 -21.87941 -20.18426 -18.73478 -17.21741 -17.07900 -16.17250 -15.80214 -15.02359 -14.83418 -14.49796 -14.38990 -13.78929 -13.59180 -13.33999 -13.27621 -12.84100 -12.69164 -12.07236 -11.94341 -10.88241 -10.75961 -9.50297 -9.19259 -8.18367 -6.44533 0.12107 1.01080 1.41765 1.42755 1.49800 1.59306 2.03008 2.26594 2.37414 3.01396 3.20345 4.00760 4.06283 4.57525 4.73997 4.96639 4.97251 5.28453 5.53701 5.59950 5.88707 6.20310 6.21536 6.51316 6.79157 7.01399 7.31336 8.76649 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.052510 B = 0.009686 C = 0.009244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.107108 B = 2890.042019 C = 3028.175404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.322 3.678 3 C -0.028 4.028 4 C -0.083 4.083 5 C -0.240 4.240 6 C 0.081 3.919 7 C 0.275 3.725 8 H 0.062 0.938 9 N -0.844 5.844 10 C -0.572 4.572 11 H 0.051 0.949 12 C 0.031 3.969 13 N -0.909 5.909 14 Si 0.961 3.039 15 H -0.277 1.277 16 H -0.279 1.279 17 H -0.270 1.270 18 O -0.171 6.171 19 H 0.198 0.802 20 H 0.175 0.825 21 H 0.354 0.646 22 H 0.321 0.679 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.059 0.995 5.930 6.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C 0.008 3.992 3 C -0.079 4.079 4 C -0.105 4.105 5 C -0.260 4.260 6 C 0.026 3.974 7 C 0.164 3.836 8 H 0.079 0.921 9 N -0.374 5.374 10 C -0.612 4.612 11 H 0.069 0.931 12 C -0.171 4.171 13 N -0.548 5.548 14 Si 0.786 3.214 15 H -0.203 1.203 16 H -0.204 1.204 17 H -0.196 1.196 18 O -0.066 6.066 19 H 0.215 0.785 20 H 0.192 0.808 21 H 0.170 0.830 22 H 0.130 0.870 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.828 1.646 5.949 7.837 hybrid contribution 0.978 -1.859 -0.797 2.247 sum -3.850 -0.214 5.152 6.435 Atomic orbital electron populations 1.81266 1.11073 1.11567 1.06657 1.23538 0.89553 0.92385 0.93744 1.16666 0.84288 1.19452 0.87496 1.22198 0.90808 0.98013 0.99482 1.21785 0.99259 1.11386 0.93535 1.23760 0.81623 0.95612 0.96380 1.17734 0.86189 0.92383 0.87258 0.92078 1.59453 1.10138 1.59156 1.08636 1.21905 1.14869 0.93031 1.31347 0.93095 1.25642 0.94664 1.01954 0.94792 1.69783 1.18137 1.34727 1.32121 0.85568 0.77563 0.79988 0.78287 1.20282 1.20436 1.19553 1.84046 1.17072 1.70292 1.35146 0.78520 0.80779 0.83021 0.87011 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.04 18.54 19.00 0.35 -13.69 14 2 C 0.32 10.09 15.88 88.33 1.40 11.49 14 3 C -0.03 -0.89 7.08 23.12 0.16 -0.73 14 4 C -0.08 -2.23 10.84 22.42 0.24 -1.99 14 5 C -0.24 -7.76 10.76 22.08 0.24 -7.52 14 6 C 0.08 3.25 6.08 24.95 0.15 3.40 14 7 C 0.27 12.79 3.17 43.42 0.14 12.93 14 8 H 0.06 3.00 8.13 -2.39 -0.02 2.98 14 9 N -0.84 -38.65 9.18 -174.95 -1.61 -40.26 14 10 C -0.57 -29.03 8.71 25.60 0.22 -28.80 14 11 H 0.05 2.62 7.74 -2.91 -0.02 2.60 14 12 C 0.03 1.57 5.38 84.65 0.46 2.03 14 13 N -0.91 -46.81 11.54 21.45 0.25 -46.57 14 14 Si 0.96 40.53 29.54 68.60 2.03 42.56 14 15 H -0.28 -11.73 7.11 99.48 0.71 -11.02 14 16 H -0.28 -11.47 7.11 99.48 0.71 -10.76 14 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 14 18 O -0.17 -6.76 10.54 -5.73 -0.06 -6.82 14 19 H 0.20 3.49 8.06 -2.91 -0.02 3.47 14 20 H 0.17 4.82 8.06 -2.91 -0.02 4.79 14 21 H 0.35 17.10 7.08 -89.69 -0.63 16.46 14 22 H 0.32 14.47 8.87 -89.70 -0.80 13.68 14 23 H 0.27 13.37 8.31 -92.71 -0.77 12.60 14 Total: -1.00 -53.46 224.78 3.81 -49.66 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.17 Total: 24.31 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 3.02 Total: -9.19 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -1.01 Total: -100.51 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.06 Total: -6.82 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -53.46 3.81 -49.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591024.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.808 kcal (2) G-P(sol) polarization free energy of solvation -53.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds