Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 O 1.34878 * 125.98630 * 8.73539 * 3 2 1 5 5 C 1.34059 * 109.38718 * 180.27062 * 4 3 2 6 6 C 1.35050 * 108.76483 * 359.73788 * 5 4 3 7 7 C 1.36552 * 125.98680 * 188.54758 * 3 2 1 8 8 C 1.50701 * 126.64454 * 0.02562 * 7 3 2 9 9 H 1.08994 * 109.47007 * 324.70622 * 8 7 3 10 10 N 1.46899 * 109.46903 * 204.71039 * 8 7 3 11 11 C 1.50692 * 109.47196 * 84.71265 * 8 7 3 12 12 H 1.07992 * 120.00593 * 24.53278 * 11 8 7 13 13 C 1.37884 * 119.99708 * 204.53566 * 11 8 7 14 14 N 1.31515 * 119.99800 * 353.28429 * 13 11 8 15 15 Si 1.86802 * 120.00071 * 173.28851 * 13 11 8 16 16 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.46676 * 299.99904 * 15 13 11 18 18 H 1.48500 * 109.47166 * 59.99600 * 15 13 11 19 19 H 1.07998 * 125.61465 * 179.75057 * 5 4 3 20 20 H 1.08002 * 126.44036 * 179.97438 * 6 5 4 21 21 H 1.00902 * 111.00548 * 178.18948 * 10 8 7 22 22 H 1.00898 * 111.00445 * 302.14869 * 10 8 7 23 23 H 0.96996 * 120.00057 * 358.62298 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 8 3.3610 -1.0777 -0.1657 5 6 4.6455 -0.6995 -0.1017 6 6 4.6960 0.6347 0.1014 7 6 3.3699 1.0936 0.1642 8 6 2.9194 2.5157 0.3785 9 1 2.0101 2.6989 -0.1939 10 7 3.9734 3.4359 -0.0689 11 6 2.6449 2.7403 1.8431 12 1 3.1304 2.1232 2.5845 13 6 1.7736 3.7339 2.2367 14 7 1.2846 4.5700 1.3471 15 14 1.2879 3.8925 4.0335 16 1 0.3484 5.0312 4.1936 17 1 0.6284 2.6392 4.4804 18 1 2.5014 4.1333 4.8549 19 1 5.4993 -1.3540 -0.1970 20 1 5.5882 1.2356 0.1977 21 1 3.6837 4.3966 0.0371 22 1 4.8374 3.2625 0.4225 23 1 1.5523 4.5002 0.4174 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238596511.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = 39.004000 kcal Electronic energy + Delta-G solvation = -11360.948179 eV Core-core repulsion = 9175.965553 eV Total energy + Delta-G solvation = -2184.982625 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.20832 -36.12437 -35.51719 -32.51963 -30.72090 -29.65021 -25.74421 -23.18237 -22.17841 -20.27086 -18.44886 -17.02854 -15.87971 -15.66541 -14.77561 -13.85671 -13.61622 -13.05437 -12.82860 -12.75681 -12.52450 -12.30607 -12.04044 -11.44925 -10.88355 -10.31126 -10.07461 -9.71076 -9.21613 -8.70094 -8.13560 -7.39282 -6.53975 -4.34647 1.54736 2.62340 2.89764 3.33975 3.38238 3.50720 3.55486 3.89876 4.40212 4.71123 5.12871 5.29050 5.42155 5.90084 6.11194 6.28097 6.43852 6.77897 7.04124 7.42156 7.76035 7.91522 8.14756 8.33660 8.56680 8.62387 9.38520 10.79548 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.036489 B = 0.013692 C = 0.011986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.177708 B = 2044.570291 C = 2335.480516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.310 3.690 3 C -0.003 4.003 4 O -0.168 6.168 5 C -0.017 4.017 6 C -0.204 4.204 7 C -0.020 4.020 8 C 0.241 3.759 9 H 0.055 0.945 10 N -0.851 5.851 11 C -0.629 4.629 12 H 0.053 0.947 13 C 0.031 3.969 14 N -0.898 5.898 15 Si 1.066 2.934 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.286 1.286 19 H 0.208 0.792 20 H 0.154 0.846 21 H 0.337 0.663 22 H 0.322 0.678 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 -6.849 -1.293 10.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.004 4.004 3 C -0.054 4.054 4 O -0.063 6.063 5 C -0.087 4.087 6 C -0.224 4.224 7 C -0.026 4.026 8 C 0.132 3.868 9 H 0.073 0.927 10 N -0.378 5.378 11 C -0.669 4.669 12 H 0.071 0.929 13 C -0.176 4.176 14 N -0.533 5.533 15 Si 0.893 3.107 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.212 1.212 19 H 0.225 0.775 20 H 0.171 0.829 21 H 0.149 0.851 22 H 0.132 0.868 23 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.801 -6.612 -1.042 8.237 hybrid contribution 1.590 -0.525 0.072 1.676 sum 6.391 -7.137 -0.970 9.629 Atomic orbital electron populations 1.81194 1.10777 1.06107 1.10352 1.23402 0.89644 0.94208 0.93175 1.16108 0.84390 0.85781 1.19162 1.83988 1.16576 1.34198 1.71551 1.24186 0.83781 0.96378 1.04387 1.21618 0.98189 0.94338 1.08226 1.21048 0.91575 0.96962 0.92966 1.17770 0.91162 0.82907 0.95010 0.92708 1.59504 1.06732 1.08368 1.63232 1.22432 1.31629 1.21360 0.91499 0.92909 1.25907 0.92886 0.92243 1.06518 1.70847 1.43364 1.35092 1.04013 0.83580 0.76622 0.76567 0.73895 1.20550 1.21233 1.21216 0.77546 0.82868 0.85118 0.86777 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.15 18.54 41.84 0.78 -8.38 14 2 C 0.31 6.71 15.52 -22.47 -0.35 6.36 14 3 C 0.00 -0.06 7.08 -38.27 -0.27 -0.33 14 4 O -0.17 -2.83 10.67 4.76 0.05 -2.78 14 5 C -0.02 -0.24 12.08 29.60 0.36 0.12 14 6 C -0.20 -3.36 10.13 -39.87 -0.40 -3.76 14 7 C -0.02 -0.41 5.28 -104.39 -0.55 -0.96 14 8 C 0.24 5.76 2.51 -70.02 -0.18 5.58 14 9 H 0.06 1.48 7.03 -51.93 -0.36 1.11 14 10 N -0.85 -18.17 9.03 -6.66 -0.06 -18.23 14 11 C -0.63 -16.68 8.58 -34.44 -0.30 -16.97 14 12 H 0.05 1.42 7.81 -52.49 -0.41 1.01 14 13 C 0.03 0.86 5.45 -17.82 -0.10 0.76 14 14 N -0.90 -25.88 13.60 55.43 0.75 -25.12 14 15 Si 1.07 24.67 29.91 -169.99 -5.08 19.58 14 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 17 H -0.29 -6.53 7.11 56.52 0.40 -6.12 14 18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 14 19 H 0.21 1.69 8.06 -52.49 -0.42 1.27 14 20 H 0.15 2.21 7.47 -52.49 -0.39 1.81 14 21 H 0.34 7.54 8.31 -39.29 -0.33 7.22 14 22 H 0.32 6.30 8.00 -39.29 -0.31 5.98 14 23 H 0.27 7.75 6.19 -40.82 -0.25 7.50 14 LS Contribution 222.56 15.07 3.35 3.35 Total: -1.00 -29.69 222.56 -3.27 -32.97 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -1.28 Total: 7.80 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.79 Total: -9.19 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 1.47 Total: -51.73 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.05 Total: -2.78 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.69 -3.27 -32.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596511.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.970 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds