Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 O 1.34878 * 125.98630 * 8.73539 * 3 2 1 5 5 C 1.34059 * 109.38718 * 180.27062 * 4 3 2 6 6 C 1.35050 * 108.76483 * 359.73788 * 5 4 3 7 7 C 1.36552 * 125.98680 * 188.54758 * 3 2 1 8 8 C 1.50701 * 126.64454 * 0.02562 * 7 3 2 9 9 H 1.08994 * 109.47007 * 324.70622 * 8 7 3 10 10 N 1.46899 * 109.46903 * 204.71039 * 8 7 3 11 11 C 1.50692 * 109.47196 * 84.71265 * 8 7 3 12 12 H 1.07992 * 120.00593 * 24.53278 * 11 8 7 13 13 C 1.37884 * 119.99708 * 204.53566 * 11 8 7 14 14 N 1.31515 * 119.99800 * 353.28429 * 13 11 8 15 15 Si 1.86802 * 120.00071 * 173.28851 * 13 11 8 16 16 H 1.48497 * 109.47049 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.46676 * 299.99904 * 15 13 11 18 18 H 1.48500 * 109.47166 * 59.99600 * 15 13 11 19 19 H 1.07998 * 125.61465 * 179.75057 * 5 4 3 20 20 H 1.08002 * 126.44036 * 179.97438 * 6 5 4 21 21 H 1.00902 * 111.00548 * 178.18948 * 10 8 7 22 22 H 1.00898 * 111.00445 * 302.14869 * 10 8 7 23 23 H 0.96996 * 120.00057 * 358.62298 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 8 3.3610 -1.0777 -0.1657 5 6 4.6455 -0.6995 -0.1017 6 6 4.6960 0.6347 0.1014 7 6 3.3699 1.0936 0.1642 8 6 2.9194 2.5157 0.3785 9 1 2.0101 2.6989 -0.1939 10 7 3.9734 3.4359 -0.0689 11 6 2.6449 2.7403 1.8431 12 1 3.1304 2.1232 2.5845 13 6 1.7736 3.7339 2.2367 14 7 1.2846 4.5700 1.3471 15 14 1.2879 3.8925 4.0335 16 1 0.3484 5.0312 4.1936 17 1 0.6284 2.6392 4.4804 18 1 2.5014 4.1333 4.8549 19 1 5.4993 -1.3540 -0.1970 20 1 5.5882 1.2356 0.1977 21 1 3.6837 4.3966 0.0371 22 1 4.8374 3.2625 0.4225 23 1 1.5523 4.5002 0.4174 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238596511.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = 17.368826 kcal Electronic energy + Delta-G solvation = -11361.886350 eV Core-core repulsion = 9175.965553 eV Total energy + Delta-G solvation = -2185.920797 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.57800 -37.84047 -37.32198 -34.26757 -32.42423 -31.09000 -27.68848 -24.99724 -23.59475 -21.78645 -20.05201 -18.94269 -17.29676 -17.06172 -16.45380 -15.74285 -15.16452 -14.86081 -14.56361 -14.46329 -14.27826 -13.92865 -13.62240 -13.02655 -12.69778 -12.14422 -11.93077 -11.61076 -10.86942 -10.56802 -9.59802 -9.26207 -8.64624 -6.48711 0.08880 1.10345 1.46936 1.53821 1.57055 1.73140 1.94330 2.24387 2.50214 3.07375 3.39153 3.78320 4.13910 4.28495 4.67008 4.74548 4.98480 5.27343 5.50367 5.75201 6.01253 6.04065 6.25272 6.46029 6.48271 6.84063 7.31297 8.65146 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.036489 B = 0.013692 C = 0.011986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.177708 B = 2044.570291 C = 2335.480516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.314 3.686 3 C -0.028 4.028 4 O -0.163 6.163 5 C 0.034 3.966 6 C -0.225 4.225 7 C -0.041 4.041 8 C 0.243 3.757 9 H 0.013 0.987 10 N -0.836 5.836 11 C -0.631 4.631 12 H 0.048 0.952 13 C -0.016 4.016 14 N -0.926 5.926 15 Si 1.106 2.894 16 H -0.285 1.285 17 H -0.282 1.282 18 H -0.261 1.261 19 H 0.274 0.726 20 H 0.175 0.825 21 H 0.330 0.670 22 H 0.336 0.664 23 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 -8.318 -0.787 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C 0.000 4.000 3 C -0.079 4.079 4 O -0.058 6.058 5 C -0.036 4.036 6 C -0.244 4.244 7 C -0.047 4.047 8 C 0.133 3.867 9 H 0.031 0.969 10 N -0.363 5.363 11 C -0.670 4.670 12 H 0.066 0.934 13 C -0.218 4.218 14 N -0.563 5.563 15 Si 0.928 3.072 16 H -0.211 1.211 17 H -0.209 1.209 18 H -0.186 1.186 19 H 0.289 0.711 20 H 0.192 0.808 21 H 0.141 0.859 22 H 0.147 0.853 23 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.171 -8.098 -0.541 10.830 hybrid contribution 1.002 -0.137 -0.145 1.021 sum 8.173 -8.235 -0.686 11.623 Atomic orbital electron populations 1.81164 1.11728 1.07120 1.11851 1.23825 0.90367 0.93370 0.92399 1.15951 0.83808 0.86753 1.21417 1.84035 1.17707 1.32928 1.71130 1.25424 0.83558 0.96161 0.98407 1.21857 0.96744 0.95948 1.09868 1.20965 0.94178 0.95252 0.94282 1.17500 0.90523 0.85599 0.93033 0.96885 1.59391 1.06539 1.07445 1.62954 1.22695 1.30941 1.20500 0.92911 0.93362 1.27116 0.93071 0.92205 1.09368 1.70942 1.44886 1.36572 1.03869 0.83067 0.77220 0.76365 0.70534 1.21056 1.20851 1.18599 0.71051 0.80781 0.85948 0.85266 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -20.39 18.54 19.00 0.35 -20.04 14 2 C 0.31 13.82 15.52 88.33 1.37 15.19 14 3 C -0.03 -1.08 7.08 23.12 0.16 -0.92 14 4 O -0.16 -4.96 10.67 -5.87 -0.06 -5.02 14 5 C 0.03 0.74 12.08 67.09 0.81 1.55 14 6 C -0.23 -6.56 10.13 22.08 0.22 -6.34 14 7 C -0.04 -1.65 5.28 -19.71 -0.10 -1.76 14 8 C 0.24 11.77 2.51 43.42 0.11 11.88 14 9 H 0.01 0.74 7.03 -2.39 -0.02 0.73 14 10 N -0.84 -35.47 9.03 -174.97 -1.58 -37.05 14 11 C -0.63 -33.55 8.58 25.60 0.22 -33.33 14 12 H 0.05 2.56 7.81 -2.91 -0.02 2.54 14 13 C -0.02 -0.91 5.45 84.66 0.46 -0.45 14 14 N -0.93 -54.67 13.60 21.45 0.29 -54.38 14 15 Si 1.11 49.60 29.91 68.60 2.05 51.66 14 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 14 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 14 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 14 19 H 0.27 2.18 8.06 -2.91 -0.02 2.16 14 20 H 0.17 4.27 7.47 -2.91 -0.02 4.25 14 21 H 0.33 14.93 8.31 -89.69 -0.75 14.19 14 22 H 0.34 12.63 8.00 -89.70 -0.72 11.91 14 23 H 0.26 15.52 6.19 -92.71 -0.57 14.95 14 Total: -1.00 -66.42 222.56 4.31 -62.11 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.00 Total: 16.90 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 3.25 Total: -14.17 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -0.94 Total: -111.47 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.06 Total: -5.02 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.66 kcal Total: -66.42 4.31 -62.11 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596511.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.480 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds