Wall clock time and date at job start Mon Mar 30 2020 01:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.36396 * 127.18407 * 195.12148 * 3 2 1 5 5 O 1.33776 * 108.38753 * 180.28770 * 4 3 2 6 6 C 1.34208 * 110.88514 * 359.71359 * 5 4 3 7 7 C 1.34210 * 109.12290 * 0.02562 * 6 5 4 8 8 C 1.50698 * 127.01467 * 179.97438 * 7 6 5 9 9 H 1.08998 * 109.47083 * 145.02143 * 8 7 6 10 10 N 1.46902 * 109.46728 * 25.02369 * 8 7 6 11 11 C 1.50697 * 109.46993 * 265.02728 * 8 7 6 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 8 7 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 H 1.08001 * 125.80477 * 0.02562 * 4 3 2 20 20 H 1.08000 * 125.43604 * 179.97438 * 6 5 4 21 21 H 1.00904 * 110.99840 * 176.04560 * 10 8 7 22 22 H 1.00902 * 111.00267 * 299.99918 * 10 8 7 23 23 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3918 1.0500 0.2835 5 8 4.6584 0.6362 0.1649 6 6 4.7079 -0.6591 -0.1831 7 6 3.4570 -1.1303 -0.3027 8 6 3.0472 -2.5314 -0.6771 9 1 2.1414 -2.8022 -0.1347 10 7 4.1250 -3.4665 -0.3279 11 6 2.7844 -2.5987 -2.1594 12 1 2.8980 -1.7143 -2.7687 13 6 2.3940 -3.7883 -2.7370 14 7 2.2562 -4.8654 -1.9951 15 14 2.0608 -3.8699 -4.5732 16 1 2.2855 -2.5321 -5.1771 17 1 2.9773 -4.8563 -5.1993 18 1 0.6539 -4.2862 -4.8029 19 1 3.0754 2.0468 0.5533 20 1 5.6104 -1.2306 -0.3422 21 1 3.8494 -4.4200 -0.5096 22 1 4.9764 -3.2365 -0.8182 23 1 1.9819 -5.7024 -2.4015 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238598658.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:16 Heat of formation + Delta-G solvation = 35.850152 kcal Electronic energy + Delta-G solvation = -11267.832158 eV Core-core repulsion = 9082.712772 eV Total energy + Delta-G solvation = -2185.119386 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.97737 -36.10399 -35.11925 -32.28283 -30.98172 -28.74472 -26.12686 -23.14476 -22.67306 -19.46621 -18.08286 -16.62054 -15.56112 -15.49582 -14.70123 -14.10025 -13.84477 -13.18181 -12.94268 -12.78459 -12.39263 -12.19047 -11.35875 -11.11226 -10.92183 -10.79686 -10.12913 -9.89570 -8.95942 -8.66471 -8.05413 -7.31011 -6.15463 -4.31406 1.76554 2.81881 3.19127 3.20071 3.28506 3.33102 3.42070 4.05436 4.30874 4.55750 5.01835 5.13423 5.68577 5.95804 6.19642 6.43368 6.68206 6.88313 7.43926 7.64198 7.69894 7.99677 8.08345 8.59115 8.84145 9.00882 9.40628 10.83304 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.036757 B = 0.012860 C = 0.011321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.586057 B = 2176.800494 C = 2472.595952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.300 3.700 3 C -0.134 4.134 4 C 0.021 3.979 5 O -0.178 6.178 6 C -0.054 4.054 7 C -0.080 4.080 8 C 0.264 3.736 9 H 0.048 0.952 10 N -0.849 5.849 11 C -0.544 4.544 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 H 0.209 0.791 20 H 0.206 0.794 21 H 0.360 0.640 22 H 0.311 0.689 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.535 7.518 2.488 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.015 4.015 3 C -0.140 4.140 4 C -0.052 4.052 5 O -0.073 6.073 6 C -0.119 4.119 7 C -0.084 4.084 8 C 0.154 3.846 9 H 0.066 0.934 10 N -0.379 5.379 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 H 0.225 0.775 20 H 0.223 0.777 21 H 0.176 0.824 22 H 0.120 0.880 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.900 7.732 3.278 9.260 hybrid contribution -0.081 -0.567 -2.187 2.261 sum 3.819 7.165 1.091 8.193 Atomic orbital electron populations 1.81148 1.11838 1.08136 1.10402 1.24474 0.91423 0.93025 0.92561 1.17279 0.86016 0.96395 1.14269 1.23999 0.80747 0.98570 1.01904 1.83772 1.27905 1.27232 1.68363 1.23520 0.99811 0.80648 1.07930 1.22022 0.90443 0.97198 0.98734 1.17447 0.91424 0.82088 0.93625 0.93379 1.59482 1.05904 1.09373 1.63146 1.21809 1.47226 0.95940 0.93426 0.92413 1.25019 0.94330 0.95641 0.98618 1.69735 1.47350 1.00576 1.35504 0.86441 0.78059 0.78185 0.84806 1.19664 1.20811 1.20839 0.77471 0.77713 0.82355 0.88048 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.38 18.54 41.84 0.78 -8.60 14 2 C 0.30 6.00 15.81 -22.48 -0.36 5.65 14 3 C -0.13 -2.45 6.15 -105.08 -0.65 -3.10 14 4 C 0.02 0.29 12.07 30.07 0.36 0.66 14 5 O -0.18 -2.65 10.53 7.35 0.08 -2.57 14 6 C -0.05 -0.91 11.33 29.31 0.33 -0.58 14 7 C -0.08 -1.64 5.43 -102.49 -0.56 -2.19 14 8 C 0.26 6.43 3.16 -70.02 -0.22 6.20 14 9 H 0.05 1.34 8.14 -51.93 -0.42 0.92 14 10 N -0.85 -19.08 8.96 -6.65 -0.06 -19.14 14 11 C -0.54 -14.44 8.71 -34.44 -0.30 -14.74 14 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 14 13 C 0.07 1.78 5.38 -17.82 -0.10 1.69 14 14 N -0.89 -24.46 11.53 55.43 0.64 -23.82 14 15 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 14 16 H -0.27 -6.36 7.11 56.52 0.40 -5.95 14 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 14 19 H 0.21 1.86 8.06 -52.49 -0.42 1.43 14 20 H 0.21 2.96 7.39 -52.49 -0.39 2.57 14 21 H 0.36 8.81 7.07 -39.29 -0.28 8.54 14 22 H 0.31 6.36 8.03 -39.29 -0.32 6.04 14 23 H 0.27 6.96 8.31 -40.82 -0.34 6.63 14 LS Contribution 223.18 15.07 3.36 3.36 Total: -1.00 -29.16 223.18 -3.07 -32.23 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -1.37 Total: 8.96 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.48 Total: -6.41 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 1.35 Total: -51.56 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.16 -3.07 -32.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598658.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.085 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds