Wall clock time and date at job start Mon Mar 30 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.36543 * 125.98901 * 71.42687 * 3 2 1 5 5 C 1.40473 * 106.70938 * 180.12709 * 4 3 2 6 6 C 1.50697 * 126.44457 * 179.83991 * 5 4 3 7 7 H 1.08991 * 109.47398 * 19.71741 * 6 5 4 8 8 N 1.46903 * 109.46800 * 139.71769 * 6 5 4 9 9 C 1.50701 * 109.46849 * 259.71341 * 6 5 4 10 10 H 1.07991 * 120.00286 * 354.86639 * 9 6 5 11 11 C 1.37885 * 119.99806 * 174.85982 * 9 6 5 12 12 N 1.31506 * 119.99923 * 164.30831 * 11 9 6 13 13 Si 1.86804 * 120.00071 * 344.31427 * 11 9 6 14 14 H 1.48495 * 109.47167 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.46794 * 299.99944 * 13 11 9 16 16 H 1.48503 * 109.46899 * 59.99375 * 13 11 9 17 17 C 1.35054 * 107.10488 * 359.58148 * 5 4 3 18 18 O 1.34051 * 108.76764 * 0.26137 * 17 5 4 19 19 H 1.08007 * 126.64723 * 359.97438 * 4 3 2 20 20 H 1.00905 * 111.00068 * 54.05545 * 8 6 5 21 21 H 1.00904 * 110.99928 * 178.00617 * 8 6 5 22 22 H 0.97005 * 120.00309 * 354.83949 * 12 11 9 23 23 H 1.07998 * 125.60944 * 180.29794 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3706 -0.3509 -1.0473 5 6 4.6965 -0.2054 -0.6067 6 6 5.9419 -0.4794 -1.4097 7 1 5.6983 -0.4715 -2.4720 8 7 6.9435 0.5579 -1.1292 9 6 6.4966 -1.8286 -1.0315 10 1 6.0465 -2.3914 -0.2272 11 6 7.5788 -2.3446 -1.7126 12 7 8.2547 -3.3525 -1.2061 13 14 8.0848 -1.6118 -3.3548 14 1 9.2691 -2.3393 -3.8776 15 1 6.9620 -1.7353 -4.3188 16 1 8.4256 -0.1779 -3.1729 17 6 4.6451 0.2318 0.6701 18 8 3.3603 0.3548 1.0325 19 1 3.0484 -0.6798 -2.0243 20 1 7.1149 0.6364 -0.1379 21 1 7.8002 0.3786 -1.6312 22 1 8.0398 -3.6845 -0.3204 23 1 5.4985 0.4473 1.2958 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238624137.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:40 Heat of formation + Delta-G solvation = 24.631628 kcal Electronic energy + Delta-G solvation = -11114.293435 eV Core-core repulsion = 8928.687577 eV Total energy + Delta-G solvation = -2185.605858 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.64041 -37.81843 -37.22933 -34.32772 -33.07911 -30.74746 -27.85533 -24.43133 -24.04144 -21.76608 -19.84763 -19.08846 -17.51731 -17.26083 -16.58660 -15.50098 -14.98123 -14.97007 -14.61515 -14.49594 -14.33775 -14.06118 -13.76022 -12.97166 -12.80845 -12.03129 -11.86315 -11.34298 -10.79473 -10.60625 -9.58522 -9.37985 -8.61247 -6.43224 0.00650 0.96465 1.48945 1.53344 1.57256 1.76340 1.90423 2.19837 2.48831 3.04696 3.15035 3.88672 4.12508 4.24909 4.55453 4.77208 4.98660 5.19580 5.51698 5.76162 5.99029 6.01299 6.14092 6.45196 6.58928 6.89080 7.37456 8.61415 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.059717 B = 0.009556 C = 0.009424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.769486 B = 2929.288945 C = 2970.537709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.321 3.679 3 C 0.006 3.994 4 C -0.105 4.105 5 C -0.158 4.158 6 C 0.243 3.757 7 H 0.048 0.952 8 N -0.845 5.845 9 C -0.625 4.625 10 H 0.020 0.980 11 C -0.015 4.015 12 N -0.933 5.933 13 Si 1.082 2.918 14 H -0.295 1.295 15 H -0.268 1.268 16 H -0.234 1.234 17 C 0.013 3.987 18 O -0.162 6.162 19 H 0.174 0.826 20 H 0.332 0.668 21 H 0.332 0.668 22 H 0.254 0.746 23 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 8.317 0.227 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C 0.006 3.994 3 C -0.046 4.046 4 C -0.128 4.128 5 C -0.160 4.160 6 C 0.133 3.867 7 H 0.066 0.934 8 N -0.375 5.375 9 C -0.665 4.665 10 H 0.039 0.961 11 C -0.215 4.215 12 N -0.568 5.568 13 Si 0.903 3.097 14 H -0.221 1.221 15 H -0.194 1.194 16 H -0.158 1.158 17 C -0.057 4.057 18 O -0.056 6.056 19 H 0.191 0.809 20 H 0.144 0.856 21 H 0.147 0.853 22 H 0.063 0.937 23 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.723 8.754 -1.053 10.512 hybrid contribution 0.099 -1.386 1.907 2.360 sum -5.624 7.368 0.855 9.308 Atomic orbital electron populations 1.81297 1.11030 1.10646 1.06863 1.23431 0.89422 0.92721 0.93779 1.16259 0.84105 1.15076 0.89169 1.22020 0.91410 0.99509 0.99830 1.20543 0.95428 1.03955 0.96081 1.17572 0.86458 0.88099 0.94567 0.93436 1.59759 1.14589 1.49513 1.13685 1.22841 1.16728 1.06348 1.20570 0.96148 1.27199 0.93177 0.95015 1.06108 1.70959 1.40412 1.27531 1.17896 0.83558 0.76594 0.77348 0.72176 1.22136 1.19361 1.15827 1.24470 0.83088 1.01640 0.96536 1.84047 1.16963 1.67629 1.36984 0.80891 0.85638 0.85294 0.93694 0.74943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.01 18.54 19.01 0.35 -12.65 14 2 C 0.32 9.35 15.89 88.33 1.40 10.75 14 3 C 0.01 0.18 7.08 23.12 0.16 0.34 14 4 C -0.10 -3.29 10.79 22.42 0.24 -3.05 14 5 C -0.16 -5.63 5.08 -20.05 -0.10 -5.73 14 6 C 0.24 9.97 2.72 43.42 0.12 10.09 14 7 H 0.05 1.97 6.86 -2.39 -0.02 1.96 14 8 N -0.84 -30.84 9.19 -174.96 -1.61 -32.44 14 9 C -0.63 -31.79 9.05 25.60 0.23 -31.56 14 10 H 0.02 1.16 7.99 -2.92 -0.02 1.14 14 11 C -0.02 -0.80 5.38 84.66 0.46 -0.35 14 12 N -0.93 -54.61 13.69 21.45 0.29 -54.31 14 13 Si 1.08 44.96 26.42 68.60 1.81 46.78 14 14 H -0.29 -12.78 7.11 99.48 0.71 -12.07 14 15 H -0.27 -10.57 7.11 99.48 0.71 -9.86 14 16 H -0.23 -8.28 5.69 99.48 0.57 -7.71 14 17 C 0.01 0.38 11.40 67.09 0.76 1.15 14 18 O -0.16 -4.84 10.67 -5.75 -0.06 -4.91 14 19 H 0.17 4.73 8.06 -2.91 -0.02 4.71 14 20 H 0.33 11.06 7.93 -89.69 -0.71 10.35 14 21 H 0.33 12.44 5.50 -89.69 -0.49 11.95 14 22 H 0.25 15.17 8.73 -92.70 -0.81 14.37 14 23 H 0.23 5.70 7.49 -2.91 -0.02 5.67 14 Total: -1.00 -59.36 218.35 3.95 -55.42 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.12 Total: 20.49 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 3.28 Total: -18.37 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -0.96 Total: -99.41 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.06 Total: -4.91 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.81 Total: 46.78 kcal Total: -59.36 3.95 -55.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624137.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.049 kcal (2) G-P(sol) polarization free energy of solvation -59.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds