Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38571 * 119.78042 * 2 1 4 4 C 1.37623 * 120.30540 * 180.02562 * 3 2 1 5 5 C 1.40761 * 119.85664 * 0.02562 * 4 3 2 6 6 C 1.41407 * 120.21710 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00250 * 205.41994 * 6 5 4 8 8 C 1.39935 * 119.99759 * 25.41965 * 6 5 4 9 9 N 1.30826 * 119.99963 * 15.34331 * 8 6 5 10 10 Si 1.86797 * 120.00034 * 195.33822 * 8 6 5 11 11 H 1.48501 * 109.47135 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47091 * 120.00140 * 10 8 6 13 13 H 1.48501 * 109.47429 * 240.00030 * 10 8 6 14 14 C 1.40607 * 119.56757 * 359.73575 * 5 4 3 15 15 C 1.50703 * 120.15521 * 180.28872 * 14 5 4 16 16 C 1.38131 * 119.69254 * 0.53270 * 14 5 4 17 17 O 1.35897 * 119.93740 * 179.73348 * 16 14 5 18 18 H 1.09008 * 109.46769 * 269.97875 * 1 2 3 19 19 H 1.08999 * 109.46955 * 29.97218 * 1 2 3 20 20 H 1.08990 * 109.47256 * 149.97433 * 1 2 3 21 21 H 1.07997 * 119.84066 * 0.02562 * 3 2 1 22 22 H 1.08003 * 120.07172 * 180.02562 * 4 3 2 23 23 H 0.97005 * 120.00176 * 179.97438 * 9 8 6 24 24 H 1.08994 * 109.47262 * 270.24669 * 15 14 5 25 25 H 1.09003 * 109.46939 * 30.24772 * 15 14 5 26 26 H 1.09000 * 109.46669 * 150.24235 * 15 14 5 27 27 H 0.96702 * 114.00533 * 269.73036 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2027 0.0000 4 6 3.5714 1.2153 -0.0005 5 6 4.2833 0.0010 -0.0016 6 6 5.6974 0.0051 -0.0027 7 1 6.2395 -0.8379 -0.4050 8 6 6.3943 1.1014 0.5174 9 7 5.7731 1.9757 1.2667 10 14 8.2114 1.3166 0.1420 11 1 8.6741 0.2004 -0.7213 12 1 8.4220 2.6068 -0.5625 13 1 8.9828 1.3140 1.4110 14 6 3.5792 -1.2161 0.0035 15 6 4.3281 -2.5239 0.0089 16 6 2.1980 -1.2075 -0.0017 17 8 1.5124 -2.3809 -0.0022 18 1 -0.3633 -0.0004 1.0278 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3633 -0.8897 -0.5142 21 1 1.6491 2.1344 0.0004 22 1 4.1040 2.1549 -0.0001 23 1 6.2563 2.7355 1.6276 24 1 4.5124 -2.8413 -1.0173 25 1 5.2790 -2.3958 0.5261 26 1 3.7343 -3.2803 0.5222 27 1 1.3137 -2.7199 -0.8858 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257913702.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = -44.977204 kcal Electronic energy + Delta-G solvation = -11711.568810 eV Core-core repulsion = 9626.484830 eV Total energy + Delta-G solvation = -2085.083980 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.53519 -35.72768 -33.60026 -32.02560 -29.43371 -27.35934 -25.67143 -23.63115 -20.59042 -19.46296 -17.83689 -16.09092 -15.38053 -14.48381 -14.19795 -13.60130 -12.90848 -12.42169 -12.18751 -12.07883 -11.80745 -11.47705 -11.38103 -11.13993 -10.82732 -10.56132 -10.17643 -9.98120 -9.73867 -9.18584 -8.98930 -7.25163 -7.10268 -6.75405 -4.36824 2.71223 2.84939 3.06559 3.11685 3.15418 3.91864 4.53409 5.32544 5.58269 6.02278 6.15524 6.34135 6.42485 6.48367 6.60728 6.66884 6.76959 7.00113 7.08729 7.22939 7.36778 7.50700 7.82264 7.92186 8.04443 8.18449 8.49889 8.71689 8.88455 9.00233 10.18015 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.052939 B = 0.012123 C = 0.010150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.786246 B = 2309.138142 C = 2757.845529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.232 4.232 3 C -0.097 4.097 4 C -0.163 4.163 5 C 0.117 3.883 6 C -0.457 4.457 7 H 0.081 0.919 8 C 0.074 3.926 9 N -0.794 5.794 10 Si 0.909 3.091 11 H -0.260 1.260 12 H -0.272 1.272 13 H -0.274 1.274 14 C -0.217 4.217 15 C -0.081 4.081 16 C 0.118 3.882 17 O -0.507 6.507 18 H 0.044 0.956 19 H 0.043 0.957 20 H 0.046 0.954 21 H 0.091 0.909 22 H 0.122 0.878 23 H 0.280 0.720 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -1.905 -2.996 4.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.233 4.233 3 C -0.115 4.115 4 C -0.182 4.182 5 C 0.115 3.885 6 C -0.486 4.486 7 H 0.099 0.901 8 C -0.143 4.143 9 N -0.420 5.420 10 Si 0.733 3.267 11 H -0.184 1.184 12 H -0.197 1.197 13 H -0.200 1.200 14 C -0.218 4.218 15 C -0.138 4.138 16 C 0.075 3.925 17 O -0.315 6.315 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.109 0.891 22 H 0.140 0.860 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.809 -1.632 -2.226 3.301 hybrid contribution 0.764 0.223 -0.523 0.952 sum -1.045 -1.409 -2.749 3.261 Atomic orbital electron populations 1.20268 0.93403 0.99927 0.99967 1.19446 0.94307 0.92762 1.16801 1.20466 0.94632 0.95035 1.01414 1.21398 0.92229 0.98980 1.05594 1.17374 0.93235 0.89853 0.88071 1.19601 0.91310 1.02547 1.35160 0.90124 1.25930 1.00971 0.94767 0.92672 1.69828 1.38426 1.10822 1.22930 0.86251 0.81960 0.79297 0.79164 1.18389 1.19737 1.19988 1.19996 0.91797 0.95392 1.14660 1.20269 0.99562 0.94476 0.99450 1.17845 0.89116 0.83313 1.02249 1.84735 1.76816 1.38157 1.31819 0.93763 0.93804 0.93539 0.89087 0.86031 0.90930 0.94356 0.92125 0.93664 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.78 36.01 0.35 -1.13 15 2 C -0.23 -5.33 5.92 -104.17 -0.62 -5.95 15 3 C -0.10 -2.32 9.66 -39.68 -0.38 -2.71 15 4 C -0.16 -4.28 8.69 -38.85 -0.34 -4.61 15 5 C 0.12 3.14 5.57 -106.84 -0.60 2.55 15 6 C -0.46 -12.02 8.14 -37.74 -0.31 -12.33 15 7 H 0.08 2.04 6.87 -52.49 -0.36 1.68 15 8 C 0.07 1.85 5.19 -17.34 -0.09 1.76 15 9 N -0.79 -20.55 10.87 55.55 0.60 -19.95 15 10 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 15 11 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 14 C -0.22 -5.41 5.95 -103.77 -0.62 -6.03 15 15 C -0.08 -1.76 9.17 36.01 0.33 -1.43 15 16 C 0.12 2.78 6.64 -39.29 -0.26 2.52 15 17 O -0.51 -10.31 11.55 -19.42 -0.22 -10.53 15 18 H 0.04 0.81 8.14 -51.92 -0.42 0.39 15 19 H 0.04 0.74 8.08 -51.93 -0.42 0.32 15 20 H 0.05 0.80 7.51 -51.93 -0.39 0.41 15 21 H 0.09 1.95 8.06 -52.49 -0.42 1.53 15 22 H 0.12 3.27 6.13 -52.48 -0.32 2.94 15 23 H 0.28 6.56 8.30 -40.82 -0.34 6.22 15 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 25 H 0.06 1.34 6.79 -51.93 -0.35 0.99 15 26 H 0.04 0.92 7.53 -51.93 -0.39 0.53 15 27 H 0.37 5.67 9.06 45.56 0.41 6.08 15 LS Contribution 232.63 15.07 3.51 3.51 Total: -1.00 -28.51 232.63 -5.89 -34.41 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -2.22 Total: 6.37 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -2.53 Total: -27.34 kcal Atomic # 7 Polarization: -20.55 SS G_CDS: 0.60 Total: -19.95 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.22 Total: -10.53 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.51 -5.89 -34.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913702.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.570 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds