Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47358 * 2 1 4 4 C 1.38561 * 119.84750 * 89.99487 * 3 2 1 5 5 C 1.39117 * 120.44562 * 179.97438 * 4 3 2 6 6 O 1.35901 * 119.93766 * 180.02562 * 5 4 3 7 7 C 1.38144 * 120.13662 * 0.03356 * 5 4 3 8 8 C 1.40601 * 119.68700 * 359.97438 * 7 5 4 9 9 C 1.41410 * 120.21649 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00385 * 205.08139 * 9 8 7 11 11 C 1.39938 * 119.99554 * 25.07828 * 9 8 7 12 12 N 1.30822 * 120.00147 * 17.30886 * 11 9 8 13 13 Si 1.86803 * 119.99767 * 197.30303 * 11 9 8 14 14 H 1.48497 * 109.47065 * 265.18541 * 13 11 9 15 15 H 1.48494 * 109.47052 * 25.18815 * 13 11 9 16 16 H 1.48499 * 109.46868 * 145.18588 * 13 11 9 17 17 C 1.37635 * 119.84981 * 270.28506 * 3 2 1 18 18 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 19 19 H 1.09009 * 109.47045 * 299.99930 * 1 2 3 20 20 H 1.08997 * 109.47253 * 59.99697 * 1 2 3 21 21 H 1.08997 * 109.47418 * 239.99810 * 2 1 3 22 22 H 1.09008 * 109.47214 * 119.99803 * 2 1 3 23 23 H 1.08001 * 119.78056 * 0.02562 * 4 3 2 24 24 H 0.96696 * 114.00335 * 269.98953 * 6 5 4 25 25 H 1.07994 * 120.15720 * 180.02562 * 7 5 4 26 26 H 0.97001 * 120.00624 * 179.97438 * 12 11 9 27 27 H 1.07999 * 120.06854 * 359.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0710 1.2018 5 6 2.7264 3.3823 1.2163 6 8 2.9488 4.0100 2.4010 7 6 2.9617 4.0479 0.0289 8 6 2.7303 3.3936 -1.1939 9 6 2.9669 4.0646 -2.4160 10 1 2.4395 3.7626 -3.3087 11 6 3.8844 5.1199 -2.4685 12 7 4.7604 5.2735 -1.5090 13 14 3.8583 6.3093 -3.9086 14 1 4.8394 5.8685 -4.9325 15 1 2.4985 6.3351 -4.5048 16 1 4.2163 7.6699 -3.4334 17 6 2.2551 2.0686 -1.1937 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 2.0804 1.5560 2.1336 24 1 2.1805 4.4866 2.7440 25 1 3.3225 5.0658 0.0398 26 1 5.3966 6.0047 -1.5455 27 1 2.0707 1.5596 -2.1283 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257950082.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = -47.026838 kcal Electronic energy + Delta-G solvation = -11497.009822 eV Core-core repulsion = 9411.836963 eV Total energy + Delta-G solvation = -2085.172859 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.26122 -35.89317 -34.24851 -32.07365 -29.20181 -27.73620 -25.31636 -22.97565 -20.79776 -19.98234 -17.22209 -16.34089 -15.22910 -14.68203 -14.36885 -14.03865 -13.10588 -13.05774 -12.75760 -12.12274 -11.60806 -11.27079 -11.13813 -10.89694 -10.82669 -10.54138 -10.41128 -10.05009 -9.71770 -9.19336 -9.04967 -7.39913 -7.18357 -6.74766 -4.39369 2.72713 2.88058 3.06603 3.10413 3.18232 3.92169 4.53230 5.26630 5.59926 5.62248 5.70029 6.00132 6.30170 6.34304 6.40332 6.53027 6.70002 6.79883 7.03509 7.17286 7.35418 7.41178 7.84394 7.99159 8.02797 8.12964 8.44365 8.78951 8.86876 9.01641 10.18021 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.040995 B = 0.011709 C = 0.009532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.853825 B = 2390.775676 C = 2936.666344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.078 4.078 3 C -0.050 4.050 4 C -0.261 4.261 5 C 0.107 3.893 6 O -0.512 6.512 7 C -0.188 4.188 8 C 0.120 3.880 9 C -0.463 4.463 10 H 0.079 0.921 11 C 0.075 3.925 12 N -0.790 5.790 13 Si 0.908 3.092 14 H -0.270 1.270 15 H -0.260 1.260 16 H -0.275 1.275 17 C -0.225 4.225 18 H 0.045 0.955 19 H 0.051 0.949 20 H 0.054 0.946 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.369 0.631 25 H 0.123 0.877 26 H 0.281 0.719 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -2.177 0.879 5.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.050 4.050 4 C -0.280 4.280 5 C 0.063 3.937 6 O -0.320 6.320 7 C -0.208 4.208 8 C 0.118 3.882 9 C -0.493 4.493 10 H 0.097 0.903 11 C -0.143 4.143 12 N -0.415 5.415 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.184 1.184 16 H -0.200 1.200 17 C -0.245 4.245 18 H 0.064 0.936 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.221 0.779 25 H 0.141 0.859 26 H 0.092 0.908 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.880 -2.272 0.878 4.582 hybrid contribution -0.267 0.813 -0.502 0.992 sum -4.148 -1.459 0.377 4.413 Atomic orbital electron populations 1.21705 0.95857 1.00228 1.02009 1.20424 0.95312 0.94617 1.01156 1.19154 0.98571 0.94114 0.93191 1.20410 1.15037 0.96418 0.96177 1.18404 0.99731 0.91410 0.84141 1.84787 1.39696 1.70298 1.37242 1.21558 1.07577 1.00957 0.90691 1.17442 0.88019 0.90013 0.92772 1.19566 1.20583 1.13269 0.95839 0.90274 1.25942 0.93673 0.97414 0.97288 1.69840 1.12266 1.27561 1.31804 0.86308 0.79756 0.79501 0.81222 1.19534 1.18397 1.20022 1.20867 1.12864 0.95460 0.95316 0.93607 0.92970 0.92688 0.92127 0.92444 0.89072 0.77902 0.85903 0.90785 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.89 37.16 0.37 -1.81 15 2 C -0.08 -1.39 6.05 -27.89 -0.17 -1.56 15 3 C -0.05 -1.13 5.12 -104.72 -0.54 -1.67 15 4 C -0.26 -6.10 9.64 -39.14 -0.38 -6.47 15 5 C 0.11 2.65 6.69 -39.29 -0.26 2.39 15 6 O -0.51 -11.34 13.50 -19.43 -0.26 -11.60 15 7 C -0.19 -5.08 8.63 -38.73 -0.33 -5.41 15 8 C 0.12 3.26 5.57 -106.84 -0.59 2.67 15 9 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 15 10 H 0.08 2.02 7.90 -52.49 -0.41 1.60 15 11 C 0.07 1.91 5.15 -17.35 -0.09 1.82 15 12 N -0.79 -20.99 10.96 55.55 0.61 -20.39 15 13 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 15 14 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 16 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 17 C -0.23 -5.59 9.43 -38.85 -0.37 -5.95 15 18 H 0.04 0.59 8.14 -51.93 -0.42 0.16 15 19 H 0.05 0.80 8.14 -51.92 -0.42 0.38 15 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 15 22 H 0.06 0.96 8.08 -51.92 -0.42 0.54 15 23 H 0.09 1.96 8.06 -52.49 -0.42 1.53 15 24 H 0.37 6.10 9.06 45.56 0.41 6.51 15 25 H 0.12 3.45 6.18 -52.49 -0.32 3.12 15 26 H 0.28 6.79 8.30 -40.82 -0.34 6.45 15 27 H 0.09 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -29.25 238.75 -6.20 -35.45 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -2.41 Total: 8.00 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: -2.70 Total: -28.75 kcal Atomic # 7 Polarization: -20.99 SS G_CDS: 0.61 Total: -20.39 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.26 Total: -11.60 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.25 -6.20 -35.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257950082.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.577 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds