Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37669 * 119.84463 * 2 1 4 4 C 1.40735 * 119.85262 * 180.02562 * 3 2 1 5 5 C 1.41403 * 120.21675 * 179.97438 * 4 3 2 6 6 H 1.08009 * 120.00025 * 24.30111 * 5 4 3 7 7 C 1.39931 * 120.00283 * 204.30532 * 5 4 3 8 8 N 1.30832 * 119.99863 * 17.72106 * 7 5 4 9 9 Si 1.86801 * 120.00275 * 197.72445 * 7 5 4 10 10 H 1.48504 * 109.46835 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47036 * 119.99856 * 9 7 5 12 12 H 1.48493 * 109.47288 * 239.99989 * 9 7 5 13 13 C 1.40638 * 119.56804 * 359.72618 * 4 3 2 14 14 C 1.38096 * 119.69174 * 0.52153 * 13 4 3 15 15 O 1.35904 * 119.93258 * 179.75418 * 14 13 4 16 16 C 1.38529 * 119.84978 * 179.97438 * 2 1 3 17 17 C 1.50691 * 119.77590 * 0.02562 * 16 2 1 18 18 H 1.09004 * 109.47049 * 270.02088 * 1 2 3 19 19 H 1.08993 * 109.47346 * 30.02296 * 1 2 3 20 20 H 1.09001 * 109.47220 * 150.02657 * 1 2 3 21 21 H 1.07991 * 120.07389 * 0.02562 * 3 2 1 22 22 H 0.97001 * 119.99866 * 180.02562 * 8 7 5 23 23 H 1.08003 * 120.15363 * 180.29593 * 13 4 3 24 24 H 0.96700 * 113.99930 * 269.72663 * 15 14 13 25 25 H 1.09000 * 109.47740 * 269.97747 * 17 16 2 26 26 H 1.09007 * 109.47299 * 29.98066 * 17 16 2 27 27 H 1.09003 * 109.46852 * 149.97564 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1921 1.1941 0.0000 4 6 3.5994 1.1943 -0.0005 5 6 4.3109 2.4163 -0.0011 6 1 3.8460 3.3120 0.3838 7 6 5.6172 2.4652 -0.5004 8 7 6.0597 1.5042 -1.2700 9 14 6.7292 3.9026 -0.0681 10 1 5.9956 4.8493 0.8099 11 1 7.9336 3.4008 0.6411 12 1 7.1421 4.6005 -1.3120 13 6 4.2936 -0.0288 0.0048 14 6 3.5879 -1.2158 -0.0005 15 8 4.2537 -2.4006 -0.0004 16 6 2.1964 -1.2015 0.0005 17 6 1.4345 -2.5016 0.0005 18 1 -0.3633 0.0004 1.0277 19 1 -0.3634 0.8897 -0.5141 20 1 -0.3634 -0.8902 -0.5134 21 1 1.6508 2.1286 0.0004 22 1 6.9653 1.5379 -1.6158 23 1 5.3735 -0.0397 0.0092 24 1 4.4462 -2.7436 -0.8838 25 1 1.2506 -2.8151 1.0282 26 1 0.4829 -2.3651 -0.5134 27 1 2.0186 -3.2651 -0.5133 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258052312.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = -44.265030 kcal Electronic energy + Delta-G solvation = -11637.157779 eV Core-core repulsion = 9552.104681 eV Total energy + Delta-G solvation = -2085.053098 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.46173 -35.75610 -34.15074 -31.39060 -29.77004 -27.37652 -25.72615 -23.68290 -20.57552 -19.76098 -17.28998 -16.27385 -15.34292 -14.54774 -14.12597 -13.87637 -13.12474 -12.68522 -12.21912 -12.01472 -11.87413 -11.53177 -11.29995 -11.09244 -10.85820 -10.51952 -10.40004 -9.95471 -9.76143 -9.18478 -9.02157 -7.24447 -7.16335 -6.76207 -4.37393 2.69691 2.88198 3.07077 3.12213 3.15548 3.92378 4.49828 5.35054 5.61117 5.92144 5.99888 6.12197 6.23019 6.31704 6.47825 6.57667 6.64124 6.86476 7.05133 7.22157 7.37092 7.43297 7.80319 8.00423 8.05162 8.12976 8.44056 8.79651 8.87166 9.01797 10.16847 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.050212 B = 0.011765 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.506549 B = 2379.401888 C = 2849.391246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.225 4.225 4 C 0.118 3.882 5 C -0.462 4.462 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.793 5.793 9 Si 0.908 3.092 10 H -0.260 1.260 11 H -0.272 1.272 12 H -0.274 1.274 13 C -0.187 4.187 14 C 0.111 3.889 15 O -0.511 6.511 16 C -0.234 4.234 17 C -0.082 4.082 18 H 0.055 0.945 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.280 0.720 23 H 0.124 0.876 24 H 0.370 0.630 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -1.986 -0.060 3.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.245 4.245 4 C 0.116 3.884 5 C -0.491 4.491 6 H 0.098 0.902 7 C -0.142 4.142 8 N -0.419 5.419 9 Si 0.733 3.267 10 H -0.184 1.184 11 H -0.197 1.197 12 H -0.200 1.200 13 C -0.207 4.207 14 C 0.068 3.932 15 O -0.319 6.319 16 C -0.235 4.235 17 C -0.138 4.138 18 H 0.074 0.926 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.112 0.888 22 H 0.091 0.909 23 H 0.142 0.858 24 H 0.223 0.777 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.963 -1.985 0.418 3.591 hybrid contribution 0.724 0.587 -0.443 1.031 sum -2.240 -1.398 -0.025 2.640 Atomic orbital electron populations 1.20735 0.93666 1.01136 1.00756 1.19081 0.93704 0.92739 0.99934 1.20883 0.94216 0.95296 1.14109 1.17438 0.90742 0.92770 0.87465 1.19600 0.97525 0.95790 1.36218 0.90241 1.25922 0.98476 0.97297 0.92533 1.69831 1.17554 1.31907 1.22576 0.86261 0.79923 0.81276 0.79266 1.18359 1.19673 1.19989 1.21537 1.00246 0.90660 1.08235 1.18209 0.89139 0.84183 1.01707 1.84721 1.77869 1.37205 1.32146 1.19247 0.92545 0.93915 1.17834 1.20334 0.98334 0.95252 0.99904 0.92648 0.92823 0.92441 0.88760 0.90921 0.85846 0.77672 0.93832 0.93337 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.59 36.00 0.35 -1.56 15 2 C -0.05 -1.24 5.87 -104.73 -0.61 -1.85 15 3 C -0.23 -5.63 9.43 -38.85 -0.37 -5.99 15 4 C 0.12 3.22 5.57 -106.84 -0.60 2.63 15 5 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 15 6 H 0.08 2.05 7.91 -52.48 -0.41 1.63 15 7 C 0.08 1.91 5.14 -17.34 -0.09 1.82 15 8 N -0.79 -20.68 10.96 55.55 0.61 -20.07 15 9 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 15 10 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 13 C -0.19 -5.05 8.63 -38.73 -0.33 -5.38 15 14 C 0.11 2.74 6.66 -39.29 -0.26 2.48 15 15 O -0.51 -11.16 12.52 -19.44 -0.24 -11.41 15 16 C -0.23 -5.37 5.92 -104.18 -0.62 -5.99 15 17 C -0.08 -1.53 9.37 36.00 0.34 -1.19 15 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.05 0.89 8.08 -51.93 -0.42 0.47 15 20 H 0.06 0.93 5.92 -51.93 -0.31 0.62 15 21 H 0.09 2.21 8.06 -52.49 -0.42 1.78 15 22 H 0.28 6.61 8.30 -40.82 -0.34 6.27 15 23 H 0.12 3.47 6.16 -52.48 -0.32 3.15 15 24 H 0.37 6.39 9.06 45.56 0.41 6.81 15 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.05 0.81 5.92 -51.93 -0.31 0.50 15 27 H 0.04 0.80 7.51 -51.93 -0.39 0.41 15 LS Contribution 232.81 15.07 3.51 3.51 Total: -1.00 -28.85 232.81 -5.85 -34.70 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -2.15 Total: 7.28 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -2.54 Total: -27.78 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.61 Total: -20.07 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.24 Total: -11.41 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.85 -5.85 -34.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258052312.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.568 kcal (2) G-P(sol) polarization free energy of solvation -28.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds