Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37669 * 119.84463 * 2 1 4 4 C 1.40735 * 119.85262 * 180.02562 * 3 2 1 5 5 C 1.41403 * 120.21675 * 179.97438 * 4 3 2 6 6 H 1.08009 * 120.00025 * 24.30111 * 5 4 3 7 7 C 1.39931 * 120.00283 * 204.30532 * 5 4 3 8 8 N 1.30832 * 119.99863 * 17.72106 * 7 5 4 9 9 Si 1.86801 * 120.00275 * 197.72445 * 7 5 4 10 10 H 1.48504 * 109.46835 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47036 * 119.99856 * 9 7 5 12 12 H 1.48493 * 109.47288 * 239.99989 * 9 7 5 13 13 C 1.40638 * 119.56804 * 359.72618 * 4 3 2 14 14 C 1.38096 * 119.69174 * 0.52153 * 13 4 3 15 15 O 1.35904 * 119.93258 * 179.75418 * 14 13 4 16 16 C 1.38529 * 119.84978 * 179.97438 * 2 1 3 17 17 C 1.50691 * 119.77590 * 0.02562 * 16 2 1 18 18 H 1.09004 * 109.47049 * 270.02088 * 1 2 3 19 19 H 1.08993 * 109.47346 * 30.02296 * 1 2 3 20 20 H 1.09001 * 109.47220 * 150.02657 * 1 2 3 21 21 H 1.07991 * 120.07389 * 0.02562 * 3 2 1 22 22 H 0.97001 * 119.99866 * 180.02562 * 8 7 5 23 23 H 1.08003 * 120.15363 * 180.29593 * 13 4 3 24 24 H 0.96700 * 113.99930 * 269.72663 * 15 14 13 25 25 H 1.09000 * 109.47740 * 269.97747 * 17 16 2 26 26 H 1.09007 * 109.47299 * 29.98066 * 17 16 2 27 27 H 1.09003 * 109.46852 * 149.97564 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1921 1.1941 0.0000 4 6 3.5994 1.1943 -0.0005 5 6 4.3109 2.4163 -0.0011 6 1 3.8460 3.3120 0.3838 7 6 5.6172 2.4652 -0.5004 8 7 6.0597 1.5042 -1.2700 9 14 6.7292 3.9026 -0.0681 10 1 5.9956 4.8493 0.8099 11 1 7.9336 3.4008 0.6411 12 1 7.1421 4.6005 -1.3120 13 6 4.2936 -0.0288 0.0048 14 6 3.5879 -1.2158 -0.0005 15 8 4.2537 -2.4006 -0.0004 16 6 2.1964 -1.2015 0.0005 17 6 1.4345 -2.5016 0.0005 18 1 -0.3633 0.0004 1.0277 19 1 -0.3634 0.8897 -0.5141 20 1 -0.3634 -0.8902 -0.5134 21 1 1.6508 2.1286 0.0004 22 1 6.9653 1.5379 -1.6158 23 1 5.3735 -0.0397 0.0092 24 1 4.4462 -2.7436 -0.8838 25 1 1.2506 -2.8151 1.0282 26 1 0.4829 -2.3651 -0.5134 27 1 2.0186 -3.2651 -0.5133 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258052312.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = -62.710976 kcal Electronic energy + Delta-G solvation = -11637.957655 eV Core-core repulsion = 9552.104681 eV Total energy + Delta-G solvation = -2085.852974 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.28901 -37.55819 -35.99231 -33.21808 -31.46864 -29.19838 -27.43100 -25.47982 -22.41415 -21.61668 -19.13343 -18.16520 -17.15004 -16.32588 -15.91655 -15.65979 -14.71211 -14.41718 -13.90319 -13.50857 -13.42447 -13.31418 -13.05548 -12.70216 -12.57510 -12.13914 -12.11858 -11.73305 -11.62609 -11.02698 -10.86145 -9.14137 -9.04558 -8.64815 -6.37349 0.85805 0.99648 1.36463 1.47215 1.52317 2.19046 2.62698 3.53093 3.75162 4.32887 4.53556 4.56839 4.67360 4.85187 4.95789 5.03905 5.14172 5.17693 5.21948 5.33716 5.51038 5.61826 5.92306 6.08656 6.17405 6.29125 6.53102 6.88260 6.92953 7.19745 8.30631 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.050212 B = 0.011765 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.506549 B = 2379.401888 C = 2849.391246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.056 4.056 3 C -0.246 4.246 4 C 0.088 3.912 5 C -0.501 4.501 6 H 0.078 0.922 7 C 0.033 3.967 8 N -0.825 5.825 9 Si 0.984 3.016 10 H -0.257 1.257 11 H -0.266 1.266 12 H -0.263 1.263 13 C -0.222 4.222 14 C 0.106 3.894 15 O -0.513 6.513 16 C -0.239 4.239 17 C -0.078 4.078 18 H 0.073 0.927 19 H 0.064 0.936 20 H 0.080 0.920 21 H 0.100 0.900 22 H 0.288 0.712 23 H 0.101 0.899 24 H 0.392 0.608 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -2.417 -0.021 4.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.056 4.056 3 C -0.266 4.266 4 C 0.086 3.914 5 C -0.530 4.530 6 H 0.096 0.904 7 C -0.182 4.182 8 N -0.451 5.451 9 Si 0.805 3.195 10 H -0.180 1.180 11 H -0.191 1.191 12 H -0.187 1.187 13 C -0.242 4.242 14 C 0.063 3.937 15 O -0.324 6.324 16 C -0.240 4.240 17 C -0.135 4.135 18 H 0.092 0.908 19 H 0.083 0.917 20 H 0.099 0.901 21 H 0.118 0.882 22 H 0.098 0.902 23 H 0.119 0.881 24 H 0.247 0.753 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.073 -2.439 0.441 4.768 hybrid contribution 0.992 0.592 -0.473 1.248 sum -3.081 -1.847 -0.032 3.592 Atomic orbital electron populations 1.20788 0.89769 1.02879 1.02424 1.19646 0.96600 0.91753 0.97641 1.21124 0.93674 0.96808 1.14981 1.17807 0.92149 0.93163 0.88317 1.19862 0.99182 0.95901 1.38084 0.90430 1.26810 0.99360 1.00256 0.91749 1.69887 1.18281 1.33763 1.23173 0.85132 0.77557 0.77571 0.79279 1.18045 1.19057 1.18748 1.21478 0.99381 0.92005 1.11344 1.18386 0.90228 0.84182 1.00948 1.84644 1.77757 1.35967 1.34001 1.19787 0.92137 0.96148 1.15933 1.20382 0.99048 0.92942 1.01079 0.90826 0.91726 0.90125 0.88152 0.90178 0.88148 0.75257 0.92822 0.90738 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.29 9.59 71.23 0.68 -2.61 15 2 C -0.06 -2.47 5.87 -19.93 -0.12 -2.58 15 3 C -0.25 -12.40 9.43 22.75 0.21 -12.19 15 4 C 0.09 4.95 5.57 -21.30 -0.12 4.84 15 5 C -0.50 -27.92 9.05 23.46 0.21 -27.71 15 6 H 0.08 4.15 7.91 -2.91 -0.02 4.13 15 7 C 0.03 1.71 5.14 85.25 0.44 2.15 15 8 N -0.83 -44.35 10.96 21.82 0.24 -44.11 15 9 Si 0.98 39.11 29.59 68.60 2.03 41.14 15 10 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 11 H -0.27 -10.22 7.11 99.48 0.71 -9.51 15 12 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 13 C -0.22 -12.40 8.63 22.82 0.20 -12.21 15 14 C 0.11 5.24 6.66 22.46 0.15 5.39 15 15 O -0.51 -22.00 12.52 -92.46 -1.16 -23.15 15 16 C -0.24 -10.53 5.92 -19.58 -0.12 -10.65 15 17 C -0.08 -2.64 9.37 71.23 0.67 -1.97 15 18 H 0.07 2.14 8.14 -2.38 -0.02 2.12 15 19 H 0.06 1.94 8.08 -2.39 -0.02 1.92 15 20 H 0.08 2.22 5.92 -2.39 -0.01 2.21 15 21 H 0.10 4.75 8.06 -2.92 -0.02 4.73 15 22 H 0.29 13.90 8.30 -92.71 -0.77 13.13 15 23 H 0.10 5.94 6.16 -2.91 -0.02 5.92 15 24 H 0.39 13.08 9.06 -74.06 -0.67 12.41 15 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 15 26 H 0.07 2.13 5.92 -2.38 -0.01 2.11 15 27 H 0.06 1.77 7.51 -2.39 -0.02 1.75 15 Total: -1.00 -63.29 232.81 3.83 -59.45 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.51 Total: 24.21 kcal Atomic # 6 Polarization: -59.75 SS G_CDS: 2.21 Total: -57.54 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.24 Total: -44.11 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.16 Total: -23.15 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -63.29 3.83 -59.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258052312.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.259 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds