Wall clock time and date at job start Mon Mar 30 2020 01:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47514 * 2 1 4 4 C 1.50696 * 109.46704 * 120.00439 * 2 1 3 5 5 C 1.38621 * 120.28922 * 300.01278 * 4 2 1 6 6 N 1.32062 * 121.32031 * 179.97438 * 5 4 2 7 7 C 1.31495 * 121.98133 * 0.02562 * 6 5 4 8 8 C 1.40711 * 120.40078 * 359.97438 * 7 6 5 9 9 C 1.41415 * 120.65983 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00329 * 23.33839 * 9 8 7 11 11 C 1.39955 * 119.99564 * 203.34180 * 9 8 7 12 12 N 1.30821 * 120.00550 * 17.46266 * 11 9 8 13 13 Si 1.86799 * 119.99700 * 197.46266 * 11 9 8 14 14 H 1.48504 * 109.47094 * 59.99870 * 13 11 9 15 15 H 1.48501 * 109.47243 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47519 * 300.00111 * 13 11 9 17 17 C 1.38017 * 120.28996 * 119.99889 * 4 2 1 18 18 H 1.09001 * 109.46849 * 300.00470 * 1 2 3 19 19 H 1.09001 * 109.46603 * 59.99701 * 1 2 3 20 20 H 1.08997 * 109.47399 * 179.97438 * 1 2 3 21 21 H 1.09008 * 109.46706 * 239.99885 * 2 1 3 22 22 H 1.08995 * 109.47237 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47013 * 300.00122 * 3 2 1 24 24 H 1.09002 * 109.46566 * 60.00137 * 3 2 1 25 25 H 1.07998 * 119.33851 * 359.96659 * 5 4 2 26 26 H 1.07998 * 119.79877 * 180.02562 * 7 6 5 27 27 H 0.96989 * 120.00319 * 180.02562 * 12 11 9 28 28 H 1.08001 * 120.89960 * 359.74773 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7008 -0.2423 2.4924 6 7 2.1292 -0.8493 3.5842 7 6 2.8879 -1.9221 3.5325 8 6 3.2715 -2.4638 2.2918 9 6 4.0869 -3.6176 2.2298 10 1 4.1171 -4.3029 3.0638 11 6 4.8547 -3.8711 1.0875 12 7 5.0947 -2.9094 0.2338 13 14 5.5370 -5.5830 0.7818 14 1 4.4161 -6.5522 0.6832 15 1 6.3100 -5.5887 -0.4861 16 1 6.4275 -5.9690 1.9057 17 6 2.8260 -1.8332 1.1107 18 1 -0.3633 0.5139 0.8900 19 1 -0.3632 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8901 22 1 3.1301 1.4424 0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6768 1.9562 0.8900 25 1 1.0798 0.6365 2.5845 26 1 3.2181 -2.3906 4.4478 27 1 5.6265 -3.0852 -0.5580 28 1 3.0954 -2.2210 0.1394 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259462608.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:11 Heat of formation + Delta-G solvation = -16.049367 kcal Electronic energy + Delta-G solvation = -11521.904613 eV Core-core repulsion = 9535.793700 eV Total energy + Delta-G solvation = -1986.110913 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41010 -36.62696 -35.81178 -32.28704 -30.73891 -27.91467 -27.51119 -23.96958 -23.66600 -21.08971 -18.84103 -17.58167 -17.03799 -16.35464 -15.61048 -14.85680 -14.60317 -14.55291 -13.70116 -13.57430 -13.30070 -13.19774 -12.91283 -12.81862 -12.57526 -12.18012 -12.02154 -11.73765 -11.29924 -11.19210 -10.04424 -9.84660 -9.41584 -8.69972 -6.46100 0.78973 1.06589 1.37902 1.49364 1.54417 2.17611 2.70586 3.68497 3.95579 4.12788 4.23707 4.43395 4.68224 4.71079 4.86248 4.87016 4.91889 5.02685 5.10471 5.18753 5.25275 5.39131 5.47111 5.48352 5.90424 5.92600 6.08495 6.51139 6.75435 6.81031 7.72625 8.23528 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.044864 B = 0.011723 C = 0.010120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.963701 B = 2387.800716 C = 2766.024518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C -0.132 4.132 4 C -0.104 4.104 5 C -0.039 4.039 6 N -0.484 5.484 7 C -0.052 4.052 8 C 0.038 3.962 9 C -0.486 4.486 10 H 0.084 0.916 11 C 0.036 3.964 12 N -0.818 5.818 13 Si 0.988 3.012 14 H -0.260 1.260 15 H -0.266 1.266 16 H -0.258 1.258 17 C -0.159 4.159 18 H 0.059 0.941 19 H 0.079 0.921 20 H 0.041 0.959 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.144 0.856 26 H 0.130 0.870 27 H 0.292 0.708 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.202 1.637 -4.510 5.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C -0.189 4.189 4 C -0.106 4.106 5 C -0.197 4.197 6 N -0.191 5.191 7 C -0.213 4.213 8 C 0.034 3.966 9 C -0.515 4.515 10 H 0.102 0.898 11 C -0.180 4.180 12 N -0.443 5.443 13 Si 0.808 3.192 14 H -0.184 1.184 15 H -0.190 1.190 16 H -0.182 1.182 17 C -0.185 4.185 18 H 0.078 0.922 19 H 0.098 0.902 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.103 0.897 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.309 2.054 -3.912 5.520 hybrid contribution 0.822 -1.084 -0.757 1.557 sum -2.487 0.970 -4.668 5.378 Atomic orbital electron populations 1.21755 0.93070 1.01380 1.02667 1.20034 0.96808 0.96183 0.93802 1.21742 1.00051 0.94469 1.02623 1.20803 0.97291 0.96056 0.96426 1.21955 1.07258 1.02884 0.87564 1.66967 1.09607 1.08718 1.33845 1.22588 1.05294 0.96755 0.96635 1.18865 0.91649 0.93425 0.92648 1.19822 1.22416 1.06706 1.02601 0.89836 1.26854 0.94494 1.02636 0.94063 1.69835 1.29158 1.34655 1.10619 0.85159 0.78777 0.76459 0.78803 1.18390 1.18975 1.18181 1.21639 1.00241 0.98058 0.98583 0.92201 0.90248 0.94007 0.92081 0.94603 0.90182 0.92221 0.83897 0.85252 0.89713 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.01 71.98 0.65 -3.18 15 2 C -0.05 -1.74 3.10 -11.54 -0.04 -1.78 15 3 C -0.13 -4.02 9.01 71.98 0.65 -3.37 15 4 C -0.10 -4.76 4.78 -19.83 -0.09 -4.86 15 5 C -0.04 -1.81 9.90 84.75 0.84 -0.97 15 6 N -0.48 -24.85 10.34 -193.62 -2.00 -26.85 15 7 C -0.05 -2.80 10.98 85.35 0.94 -1.86 15 8 C 0.04 2.12 5.60 -21.19 -0.12 2.00 15 9 C -0.49 -26.08 9.09 23.47 0.21 -25.86 15 10 H 0.08 4.27 7.90 -2.91 -0.02 4.24 15 11 C 0.04 1.77 5.18 85.26 0.44 2.21 15 12 N -0.82 -41.81 10.91 21.83 0.24 -41.58 15 13 Si 0.99 37.10 29.59 68.60 2.03 39.13 15 14 H -0.26 -9.56 7.11 99.48 0.71 -8.86 15 15 H -0.27 -9.37 7.11 99.48 0.71 -8.66 15 16 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 17 C -0.16 -8.40 8.43 22.92 0.19 -8.21 15 18 H 0.06 1.68 7.40 -2.39 -0.02 1.66 15 19 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.06 2.24 7.92 -2.38 -0.02 2.22 15 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.06 1.74 7.40 -2.39 -0.02 1.73 15 25 H 0.14 5.72 7.09 -2.91 -0.02 5.70 15 26 H 0.13 6.47 8.06 -2.91 -0.02 6.45 15 27 H 0.29 13.41 8.30 -92.72 -0.77 12.64 15 28 H 0.11 6.17 6.12 -2.91 -0.02 6.16 15 Total: -1.00 -59.50 239.98 5.07 -54.42 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 1.13 Total: 20.76 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 3.67 Total: -45.89 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.76 Total: -68.43 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Total: -59.50 5.07 -54.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259462608.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -59.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds