Wall clock time and date at job start Mon Mar 30 2020 02:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00456 * 2 1 4 4 H 1.48501 * 109.46906 * 239.99770 * 3 2 1 5 5 H 1.48502 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47479 * 119.99618 * 3 2 1 7 7 C 1.37877 * 119.99415 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00395 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.36189 * 300.16149 * 9 7 2 11 11 C 1.53342 * 109.42554 * 180.33522 * 9 7 2 12 12 N 1.46807 * 108.21863 * 189.72295 * 11 9 7 13 13 C 1.35726 * 128.03008 * 196.66545 * 12 11 9 14 14 C 1.35067 * 108.16163 * 179.71303 * 13 12 11 15 15 C 1.41110 * 107.48544 * 0.06831 * 14 13 12 16 16 C 1.34114 * 107.32599 * 0.04575 * 15 14 13 17 17 C 1.50930 * 128.19169 * 179.82162 * 16 15 14 18 18 N 1.46955 * 109.41602 * 59.99643 * 9 7 2 19 19 H 0.97002 * 119.99366 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.74303 * 70.02382 * 11 9 7 21 21 H 1.09004 * 109.71919 * 309.41188 * 11 9 7 22 22 H 1.07997 * 125.92316 * 359.75525 * 13 12 11 23 23 H 1.07994 * 126.25579 * 180.10424 * 14 13 12 24 24 H 1.08005 * 126.33362 * 180.02562 * 15 14 13 25 25 H 1.08993 * 109.75603 * 75.99353 * 17 16 15 26 26 H 1.09007 * 109.79054 * 315.27542 * 17 16 15 27 27 H 1.00901 * 110.99843 * 67.32374 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6224 -2.5536 0.8895 11 6 2.2482 -3.6640 0.0096 12 7 1.5040 -4.9073 -0.2260 13 6 1.9113 -6.1817 0.0024 14 6 0.9081 -7.0141 -0.3513 15 6 -0.1592 -6.2176 -0.8177 16 6 0.2310 -4.9373 -0.7325 17 6 -0.5437 -3.6985 -1.1109 18 7 0.4069 -2.5760 -1.2000 19 1 -0.4849 0.8401 0.0004 20 1 2.7486 -3.7127 0.9767 21 1 2.9866 -3.5221 -0.7796 22 1 2.8710 -6.4788 0.3988 23 1 0.9204 -8.0921 -0.2880 24 1 -1.1136 -6.5732 -1.1771 25 1 -1.2940 -3.4862 -0.3494 26 1 -1.0295 -3.8472 -2.0754 27 1 0.9703 -2.6446 -2.0343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259591238.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:23 Heat of formation + Delta-G solvation = 54.858835 kcal Electronic energy + Delta-G solvation = -11869.496431 eV Core-core repulsion = 9821.034418 eV Total energy + Delta-G solvation = -2048.462013 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.80594 -35.86220 -32.39404 -31.97495 -28.84457 -27.38345 -24.71570 -23.48717 -20.95132 -19.87046 -18.12272 -16.89289 -15.97288 -14.70139 -14.45290 -13.94534 -13.61312 -12.88265 -12.75998 -12.57975 -11.89685 -11.67179 -11.27729 -11.02917 -10.94417 -10.74493 -10.61734 -9.90610 -9.22898 -8.52694 -7.99756 -7.42557 -7.12157 -6.00299 -4.17383 2.87854 3.28953 3.34573 3.35465 3.54291 3.65099 4.38979 5.15111 5.50716 5.57293 5.62980 5.83375 5.91380 6.09097 6.15021 6.21149 6.31400 6.53955 6.80575 6.86094 7.16065 7.59127 7.73863 7.82110 7.98060 8.08927 8.39441 8.64977 8.94597 9.52624 11.04629 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.078890 B = 0.010469 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.837398 B = 2673.950993 C = 2948.729034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.088 3.912 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.217 3.783 10 H 0.046 0.954 11 C 0.069 3.931 12 N -0.439 5.439 13 C -0.024 4.024 14 C -0.217 4.217 15 C -0.212 4.212 16 C -0.008 4.008 17 C 0.121 3.879 18 N -0.646 5.646 19 H 0.259 0.741 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.151 0.849 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -7.132 -1.053 7.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.121 4.121 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.109 3.891 10 H 0.064 0.936 11 C -0.054 4.054 12 N -0.114 5.114 13 C -0.155 4.155 14 C -0.242 4.242 15 C -0.237 4.237 16 C -0.123 4.123 17 C -0.010 4.010 18 N -0.272 5.272 19 H 0.069 0.931 20 H 0.094 0.906 21 H 0.089 0.911 22 H 0.169 0.831 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.217 -6.200 -0.746 6.362 hybrid contribution 1.187 -0.091 -0.085 1.193 sum 2.404 -6.291 -0.830 6.786 Atomic orbital electron populations 1.70080 1.05827 1.26242 1.45547 1.24918 0.94667 0.98762 0.93723 0.86723 0.79682 0.83248 0.78579 1.20215 1.21218 1.20298 1.20718 0.92248 0.89558 1.55673 0.92479 1.19446 0.88888 0.90062 0.90742 0.93573 1.23202 0.97311 0.83515 1.01341 1.44573 1.12979 1.06254 1.47562 1.21586 1.00666 0.83451 1.09783 1.20810 0.95091 0.98128 1.10198 1.20372 1.00115 0.91990 1.11186 1.21829 0.87442 0.98045 1.04986 1.20911 0.95387 0.84032 1.00670 1.61072 1.21559 1.39582 1.05026 0.93089 0.90552 0.91136 0.83127 0.85656 0.85505 0.90207 0.90726 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.72 12.77 55.43 0.71 -23.01 15 2 C 0.09 2.34 5.39 -17.82 -0.10 2.25 15 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.54 -14.21 8.75 -34.44 -0.30 -14.52 15 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 15 9 C 0.22 5.25 2.27 -68.66 -0.16 5.09 15 10 H 0.05 1.26 8.07 -51.93 -0.42 0.84 15 11 C 0.07 1.42 6.37 -3.70 -0.02 1.40 15 12 N -0.44 -8.80 3.16 -112.15 -0.35 -9.15 15 13 C -0.02 -0.42 11.55 -16.96 -0.20 -0.62 15 14 C -0.22 -3.78 10.87 -39.62 -0.43 -4.21 15 15 C -0.21 -3.91 10.81 -39.94 -0.43 -4.34 15 16 C -0.01 -0.16 6.64 -81.60 -0.54 -0.70 15 17 C 0.12 2.46 6.95 -4.61 -0.03 2.43 15 18 N -0.65 -14.99 5.81 -108.52 -0.63 -15.62 15 19 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 20 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 21 H 0.07 1.41 8.12 -51.93 -0.42 0.99 15 22 H 0.15 2.23 8.06 -52.49 -0.42 1.80 15 23 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 24 H 0.13 2.05 8.06 -52.48 -0.42 1.63 15 25 H 0.08 1.69 8.14 -51.93 -0.42 1.27 15 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 27 H 0.32 7.22 8.79 -39.29 -0.35 6.87 15 LS Contribution 231.82 15.07 3.49 3.49 Total: -1.00 -28.30 231.82 -7.28 -35.57 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.26 Total: 6.47 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.21 Total: -13.22 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.28 Total: -47.78 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.30 -7.28 -35.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259591238.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.433 kcal (2) G-P(sol) polarization free energy of solvation -28.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds