Wall clock time and date at job start Mon Mar 30 2020 02:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00456 * 2 1 4 4 H 1.48501 * 109.46906 * 239.99770 * 3 2 1 5 5 H 1.48502 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47479 * 119.99618 * 3 2 1 7 7 C 1.37877 * 119.99415 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00395 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.36189 * 300.16149 * 9 7 2 11 11 C 1.53342 * 109.42554 * 180.33522 * 9 7 2 12 12 N 1.46807 * 108.21863 * 189.72295 * 11 9 7 13 13 C 1.35726 * 128.03008 * 196.66545 * 12 11 9 14 14 C 1.35067 * 108.16163 * 179.71303 * 13 12 11 15 15 C 1.41110 * 107.48544 * 0.06831 * 14 13 12 16 16 C 1.34114 * 107.32599 * 0.04575 * 15 14 13 17 17 C 1.50930 * 128.19169 * 179.82162 * 16 15 14 18 18 N 1.46955 * 109.41602 * 59.99643 * 9 7 2 19 19 H 0.97002 * 119.99366 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.74303 * 70.02382 * 11 9 7 21 21 H 1.09004 * 109.71919 * 309.41188 * 11 9 7 22 22 H 1.07997 * 125.92316 * 359.75525 * 13 12 11 23 23 H 1.07994 * 126.25579 * 180.10424 * 14 13 12 24 24 H 1.08005 * 126.33362 * 180.02562 * 15 14 13 25 25 H 1.08993 * 109.75603 * 75.99353 * 17 16 15 26 26 H 1.09007 * 109.79054 * 315.27542 * 17 16 15 27 27 H 1.00901 * 110.99843 * 67.32374 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6224 -2.5536 0.8895 11 6 2.2482 -3.6640 0.0096 12 7 1.5040 -4.9073 -0.2260 13 6 1.9113 -6.1817 0.0024 14 6 0.9081 -7.0141 -0.3513 15 6 -0.1592 -6.2176 -0.8177 16 6 0.2310 -4.9373 -0.7325 17 6 -0.5437 -3.6985 -1.1109 18 7 0.4069 -2.5760 -1.2000 19 1 -0.4849 0.8401 0.0004 20 1 2.7486 -3.7127 0.9767 21 1 2.9866 -3.5221 -0.7796 22 1 2.8710 -6.4788 0.3988 23 1 0.9204 -8.0921 -0.2880 24 1 -1.1136 -6.5732 -1.1771 25 1 -1.2940 -3.4862 -0.3494 26 1 -1.0295 -3.8472 -2.0754 27 1 0.9703 -2.6446 -2.0343 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259591238.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:22 Heat of formation + Delta-G solvation = 36.812797 kcal Electronic energy + Delta-G solvation = -11870.278966 eV Core-core repulsion = 9821.034418 eV Total energy + Delta-G solvation = -2049.244548 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.28846 -37.60526 -34.33058 -33.59167 -30.49737 -28.99849 -26.55524 -25.12692 -22.73402 -21.29747 -19.74173 -18.72532 -17.56839 -16.58128 -16.11939 -15.69867 -15.25988 -14.51804 -14.30796 -14.25334 -13.53847 -13.03558 -12.90963 -12.83992 -12.65932 -12.51306 -12.40344 -11.78477 -11.18847 -10.56841 -9.46089 -8.92488 -8.84012 -8.03008 -6.26706 1.41562 1.47188 1.47966 1.55225 2.13616 2.15291 2.47563 3.18224 3.81291 3.98457 4.18361 4.22643 4.28241 4.52920 4.66560 4.71616 4.80867 4.91413 5.22363 5.42150 5.44294 5.70997 5.98695 6.19198 6.36359 6.50087 6.60633 6.86037 6.99554 7.47315 9.01434 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.078890 B = 0.010469 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.837398 B = 2673.950993 C = 2948.729034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.038 3.962 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.063 0.937 9 C 0.220 3.780 10 H 0.004 0.996 11 C 0.081 3.919 12 N -0.452 5.452 13 C -0.027 4.027 14 C -0.219 4.219 15 C -0.209 4.209 16 C -0.041 4.041 17 C 0.127 3.873 18 N -0.662 5.662 19 H 0.258 0.742 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.182 0.818 23 H 0.156 0.844 24 H 0.147 0.853 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -8.140 -1.329 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.167 4.167 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.081 0.919 9 C 0.112 3.888 10 H 0.022 0.978 11 C -0.042 4.042 12 N -0.128 5.128 13 C -0.157 4.157 14 C -0.244 4.244 15 C -0.234 4.234 16 C -0.155 4.155 17 C -0.003 4.003 18 N -0.290 5.290 19 H 0.066 0.934 20 H 0.103 0.897 21 H 0.096 0.904 22 H 0.199 0.801 23 H 0.174 0.826 24 H 0.165 0.835 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.263 -7.229 -1.023 7.643 hybrid contribution 0.838 0.129 0.015 0.848 sum 3.101 -7.100 -1.008 7.813 Atomic orbital electron populations 1.70223 1.07355 1.26831 1.46996 1.25698 0.95396 1.02134 0.93426 0.85670 0.78319 0.79007 0.78795 1.19591 1.21366 1.19604 1.21115 0.92727 0.90672 1.55018 0.91929 1.19154 0.88966 0.91143 0.89552 0.97763 1.22869 0.96259 0.82932 1.02105 1.44611 1.13090 1.06688 1.48413 1.22211 1.02107 0.82404 1.08981 1.21221 0.94267 0.99630 1.09276 1.20741 1.01191 0.91427 1.10018 1.21832 0.88065 0.98409 1.07159 1.20796 0.94556 0.83754 1.01220 1.60863 1.21890 1.41554 1.04645 0.93354 0.89653 0.90427 0.80130 0.82611 0.83521 0.92069 0.88644 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.41 12.77 21.45 0.27 -50.14 15 2 C 0.04 2.05 5.39 84.65 0.46 2.51 15 3 Si 0.96 42.12 29.54 68.60 2.03 44.14 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 7 C -0.56 -29.27 8.75 25.60 0.22 -29.05 15 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 15 9 C 0.22 10.84 2.27 44.27 0.10 10.94 15 10 H 0.00 0.25 8.07 -2.39 -0.02 0.23 15 11 C 0.08 3.30 6.37 86.44 0.55 3.85 15 12 N -0.45 -17.51 3.16 -508.74 -1.61 -19.11 15 13 C -0.03 -0.88 11.55 83.36 0.96 0.08 15 14 C -0.22 -6.91 10.87 22.24 0.24 -6.67 15 15 C -0.21 -7.23 10.81 22.03 0.24 -6.99 15 16 C -0.04 -1.61 6.64 40.88 0.27 -1.34 15 17 C 0.13 5.22 6.95 85.54 0.59 5.82 15 18 N -0.66 -31.21 5.81 -497.24 -2.89 -34.10 15 19 H 0.26 14.15 8.31 -92.71 -0.77 13.38 15 20 H 0.09 3.24 8.14 -2.39 -0.02 3.23 15 21 H 0.08 3.01 8.12 -2.39 -0.02 2.99 15 22 H 0.18 4.66 8.06 -2.91 -0.02 4.64 15 23 H 0.16 3.89 8.06 -2.91 -0.02 3.87 15 24 H 0.15 4.36 8.06 -2.91 -0.02 4.33 15 25 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 26 H 0.10 3.42 8.14 -2.38 -0.02 3.40 15 27 H 0.32 14.65 8.79 -89.69 -0.79 13.86 15 Total: -1.00 -59.81 231.82 1.82 -58.00 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.37 Total: 22.06 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.64 Total: -20.85 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -4.22 Total: -103.35 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -59.81 1.82 -58.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259591238.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.810 kcal (2) G-P(sol) polarization free energy of solvation -59.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds