Wall clock time and date at job start Mon Mar 30 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.50695 * 109.47368 * 180.02562 * 3 2 1 5 5 C 1.38966 * 120.70610 * 269.97785 * 4 3 2 6 6 C 1.38758 * 119.55952 * 180.02562 * 5 4 3 7 7 N 1.31423 * 121.00831 * 0.02562 * 6 5 4 8 8 C 1.33613 * 121.51834 * 359.72920 * 7 6 5 9 9 C 1.41410 * 119.82707 * 180.26636 * 8 7 6 10 10 H 1.07995 * 119.99702 * 180.25963 * 9 8 7 11 11 C 1.40034 * 119.99780 * 0.26619 * 9 8 7 12 12 N 1.30736 * 120.00745 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99587 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.47283 * 89.99619 * 13 11 9 15 15 H 1.48502 * 109.47350 * 209.99766 * 13 11 9 16 16 H 1.48501 * 109.47203 * 329.99999 * 13 11 9 17 17 C 1.38155 * 120.70544 * 90.00407 * 4 3 2 18 18 H 1.09003 * 109.46741 * 299.99350 * 1 2 3 19 19 H 1.08989 * 109.47251 * 60.00141 * 1 2 3 20 20 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.46648 * 240.00167 * 2 1 3 22 22 H 1.08993 * 109.47666 * 120.00477 * 2 1 3 23 23 H 1.09002 * 109.47189 * 60.00025 * 3 2 1 24 24 H 1.09003 * 109.47081 * 300.00205 * 3 2 1 25 25 H 1.08000 * 120.21749 * 359.97438 * 5 4 3 26 26 H 1.07996 * 119.49466 * 179.97438 * 6 5 4 27 27 H 0.96997 * 120.00327 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.50589 * 359.94799 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2571 1.4428 1.1939 6 6 5.6444 1.4433 1.1655 7 7 6.2982 1.4441 0.0255 8 6 5.6578 1.4390 -1.1471 9 6 6.3972 1.4343 -2.3524 10 1 5.8824 1.4344 -3.3017 11 6 7.7971 1.4294 -2.3150 12 7 8.4204 1.4297 -1.1658 13 14 8.7739 1.4225 -3.9072 14 1 9.0376 2.8208 -4.3323 15 1 10.0638 0.7184 -3.6936 16 1 7.9967 0.7229 -4.9617 17 6 4.2519 1.4428 -1.1888 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8901 22 1 1.8934 -0.5139 0.8899 23 1 1.6767 1.9563 0.8900 24 1 1.6766 1.9563 -0.8900 25 1 3.7326 1.4434 2.1380 26 1 6.1952 1.4440 2.0945 27 1 9.3900 1.4267 -1.1399 28 1 3.7314 1.4421 -2.1351 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259593230.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:30 Heat of formation + Delta-G solvation = 7.558837 kcal Electronic energy + Delta-G solvation = -11242.681760 eV Core-core repulsion = 9257.594575 eV Total energy + Delta-G solvation = -1985.087184 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.24683 -34.93027 -33.36428 -30.66842 -29.87791 -26.08646 -25.53556 -21.68878 -21.29555 -20.12323 -17.01628 -15.52377 -14.85924 -14.47649 -13.99930 -13.77687 -13.21782 -12.75625 -12.41298 -11.91789 -11.68654 -11.30656 -11.17980 -10.85080 -10.73356 -10.69176 -10.33951 -10.23620 -9.73071 -9.30670 -7.93410 -7.57273 -7.49317 -6.35176 -4.47859 2.80284 3.02356 3.10590 3.13748 3.23069 3.97458 4.78548 5.34259 5.35343 5.48268 5.84685 5.93988 6.04272 6.13478 6.16456 6.24043 6.35308 6.47008 6.61125 6.70704 6.84718 6.99814 7.19599 7.43693 7.62244 7.84425 8.11061 8.28266 8.71988 8.98928 10.17915 10.36993 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.058179 B = 0.009252 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.156965 B = 3025.737401 C = 3404.113628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.072 4.072 4 C -0.028 4.028 5 C -0.315 4.315 6 C 0.122 3.878 7 N -0.487 5.487 8 C 0.256 3.744 9 C -0.435 4.435 10 H 0.082 0.918 11 C 0.070 3.930 12 N -0.718 5.718 13 Si 0.906 3.094 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.271 4.271 18 H 0.050 0.950 19 H 0.051 0.949 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.272 0.728 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -1.097 0.239 6.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.109 4.109 4 C -0.034 4.034 5 C -0.339 4.339 6 C -0.043 4.043 7 N -0.200 5.200 8 C 0.131 3.869 9 C -0.467 4.467 10 H 0.100 0.900 11 C -0.155 4.155 12 N -0.340 5.340 13 Si 0.730 3.270 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.186 1.186 17 C -0.294 4.294 18 H 0.069 0.931 19 H 0.070 0.930 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.134 0.866 27 H 0.083 0.917 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.586 -1.098 0.291 5.700 hybrid contribution -0.465 0.009 -0.591 0.753 sum -6.051 -1.090 -0.300 6.156 Atomic orbital electron populations 1.21796 0.96530 1.01019 1.01390 1.21464 0.94560 0.97067 1.02305 1.20491 0.92962 0.96280 1.01191 1.19596 0.93511 0.96579 0.93699 1.21163 0.95555 1.21040 0.96101 1.22512 0.90815 0.94219 0.96794 1.68745 1.37438 1.17242 0.96559 1.18614 0.88373 0.88053 0.91884 1.19603 0.90978 1.43457 0.92641 0.89988 1.26066 0.98581 0.93584 0.97303 1.70139 1.09196 1.29019 1.25604 0.86356 0.79172 0.79186 0.82242 1.19437 1.20144 1.18578 1.21588 0.95463 1.16423 0.95947 0.93074 0.92988 0.93175 0.91969 0.92115 0.92265 0.92153 0.89109 0.86614 0.91707 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 15 2 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 15 3 C -0.07 -1.28 5.39 -27.89 -0.15 -1.43 15 4 C -0.03 -0.63 5.16 -104.39 -0.54 -1.17 15 5 C -0.32 -7.28 9.83 -39.12 -0.38 -7.66 15 6 C 0.12 3.07 11.18 -17.53 -0.20 2.88 15 7 N -0.49 -13.92 7.87 -11.12 -0.09 -14.00 15 8 C 0.26 7.23 6.55 -84.98 -0.56 6.67 15 9 C -0.44 -11.99 9.14 -37.70 -0.34 -12.34 15 10 H 0.08 2.11 7.85 -52.49 -0.41 1.70 15 11 C 0.07 1.82 5.50 -17.35 -0.10 1.72 15 12 N -0.72 -19.65 11.46 55.55 0.64 -19.02 15 13 Si 0.91 18.95 29.56 -169.99 -5.02 13.93 15 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 15 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 16 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 17 C -0.27 -6.85 9.54 -38.70 -0.37 -7.22 15 18 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 19 H 0.05 0.61 8.14 -51.94 -0.42 0.19 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.06 1.03 8.14 -51.92 -0.42 0.61 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 23 H 0.06 0.98 8.10 -51.93 -0.42 0.55 15 24 H 0.06 1.02 8.10 -51.93 -0.42 0.60 15 25 H 0.09 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.12 2.59 8.06 -52.49 -0.42 2.17 15 27 H 0.27 6.72 8.29 -40.82 -0.34 6.38 15 28 H 0.10 2.26 8.06 -52.49 -0.42 1.84 15 LS Contribution 245.55 15.07 3.70 3.70 Total: -1.00 -29.48 245.55 -6.97 -36.45 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.77 Total: 0.98 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -2.43 Total: -22.04 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.55 Total: -33.02 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.48 -6.97 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259593230.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.008 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds