Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99481 * 2 1 4 4 H 1.48501 * 109.46935 * 270.00149 * 3 2 1 5 5 H 1.48502 * 109.47116 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.47288 * 150.00465 * 3 2 1 7 7 C 1.37869 * 120.00923 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99619 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00691 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.45492 * 59.98043 * 9 7 2 11 11 C 1.53103 * 109.46929 * 179.97438 * 9 7 2 12 12 C 1.53371 * 109.50232 * 190.29745 * 11 9 7 13 13 C 1.50816 * 108.38073 * 310.04963 * 12 11 9 14 14 N 1.34328 * 128.03499 * 196.65807 * 13 12 11 15 15 H 0.96996 * 126.08778 * 359.78772 * 14 13 12 16 16 N 1.40298 * 107.81765 * 179.78317 * 14 13 12 17 17 C 1.31070 * 108.26893 * 0.07172 * 16 14 13 18 18 C 1.35747 * 124.12251 * 16.54544 * 13 12 11 19 19 C 1.50839 * 124.11116 * 0.21014 * 18 13 12 20 20 H 0.96998 * 120.00734 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46721 * 310.30172 * 11 9 7 22 22 H 1.09002 * 109.46546 * 70.28087 * 11 9 7 23 23 H 1.09005 * 109.66790 * 190.33495 * 12 11 9 24 24 H 1.09000 * 109.72370 * 69.80337 * 12 11 9 25 25 H 1.07998 * 125.96176 * 179.97438 * 17 16 14 26 26 H 1.09004 * 109.68740 * 256.81037 * 19 18 13 27 27 H 1.08997 * 109.71636 * 136.27003 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 1 3.8750 -0.6798 0.8888 11 6 4.0220 -2.6373 -0.0010 12 6 5.5338 -2.6458 0.2569 13 6 6.1827 -1.6641 -0.6865 14 7 7.4806 -1.5707 -1.0197 15 1 8.1974 -2.1343 -0.6889 16 7 7.6146 -0.5129 -1.9315 17 6 6.4292 0.0086 -2.1330 18 6 5.5096 -0.6969 -1.3603 19 6 4.0222 -0.4701 -1.2532 20 1 -0.4851 0.8400 0.0004 21 1 3.5166 -3.2012 0.7831 22 1 3.8157 -3.0955 -0.9683 23 1 5.9310 -3.6449 0.0773 24 1 5.7329 -2.3514 1.2873 25 1 6.2046 0.8404 -2.7841 26 1 3.5251 -0.8705 -2.1369 27 1 3.8180 0.5972 -1.1692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259599952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = 61.523073 kcal Electronic energy + Delta-G solvation = -11896.542302 eV Core-core repulsion = 9848.369271 eV Total energy + Delta-G solvation = -2048.173030 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.03574 -36.22154 -32.60091 -31.84426 -29.11201 -28.99573 -24.48885 -22.87619 -21.57144 -20.19763 -18.04959 -16.99029 -16.66992 -14.73927 -14.43090 -13.97824 -13.42629 -13.14425 -12.69027 -12.54423 -12.20411 -11.89002 -11.26527 -10.92690 -10.44113 -10.14475 -10.01787 -9.73322 -9.27371 -9.12766 -8.95056 -8.50660 -7.75723 -6.04811 -4.04114 2.22298 3.17844 3.21376 3.32102 3.43172 3.46427 4.44937 5.07046 5.22988 5.27326 5.42099 5.60764 5.96331 5.99138 6.07225 6.33969 6.38703 6.49284 6.67620 6.77098 7.01397 7.11454 7.25992 7.57403 7.62228 7.80390 8.01733 8.54685 8.99058 9.58243 11.08421 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049904 B = 0.013708 C = 0.011441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.946498 B = 2042.118658 C = 2446.823109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.015 3.985 10 H 0.028 0.972 11 C -0.094 4.094 12 C -0.058 4.058 13 C 0.084 3.916 14 N -0.479 5.479 15 H 0.431 0.569 16 N -0.313 5.313 17 C 0.049 3.951 18 C -0.222 4.222 19 C -0.048 4.048 20 H 0.263 0.737 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.178 0.822 26 H 0.070 0.930 27 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.471 -2.744 -0.790 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.713 3.287 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.004 4.004 10 H 0.046 0.954 11 C -0.132 4.132 12 C -0.097 4.097 13 C -0.044 4.044 14 N -0.187 5.187 15 H 0.274 0.726 16 N -0.136 5.136 17 C -0.136 4.136 18 C -0.233 4.233 19 C -0.086 4.086 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.195 0.805 26 H 0.089 0.911 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.528 -2.546 -1.106 12.831 hybrid contribution -0.033 0.746 0.244 0.785 sum 12.495 -1.800 -0.862 12.653 Atomic orbital electron populations 1.69895 1.06306 1.26929 1.50925 1.25005 0.94646 0.99019 0.94418 0.86907 0.79896 0.83644 0.78250 1.20380 1.22585 1.18921 1.21054 0.88714 0.94481 1.50866 0.90753 1.19217 0.96505 0.91550 0.93146 0.95390 1.21492 0.90357 0.99770 1.01573 1.20495 0.97665 0.95058 0.96481 1.21085 0.84474 0.99379 0.99499 1.45963 1.07160 1.28500 1.37110 0.72602 1.77341 1.22604 1.02647 1.11055 1.23624 0.90097 1.00079 0.99780 1.20437 0.98571 1.00222 1.04109 1.20607 0.86994 0.99797 1.01247 0.92694 0.91419 0.92298 0.91320 0.90329 0.80494 0.91148 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 15 2 C 0.07 2.01 5.45 -17.82 -0.10 1.91 15 3 Si 0.88 21.85 24.28 -169.99 -4.13 17.72 15 4 H -0.28 -6.65 6.96 56.52 0.39 -6.25 15 5 H -0.30 -7.43 7.11 56.52 0.40 -7.02 15 6 H -0.26 -6.37 6.51 56.52 0.37 -6.00 15 7 C -0.51 -14.04 9.10 -34.45 -0.31 -14.35 15 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 15 9 C 0.01 0.34 1.66 -91.53 -0.15 0.18 15 10 H 0.03 0.67 7.17 -51.93 -0.37 0.29 15 11 C -0.09 -1.75 5.15 -26.49 -0.14 -1.89 15 12 C -0.06 -0.88 6.30 -27.63 -0.17 -1.05 15 13 C 0.08 1.44 7.08 -82.34 -0.58 0.86 15 14 N -0.48 -7.33 7.34 33.48 0.25 -7.08 15 15 H 0.43 4.89 8.96 -182.45 -1.64 3.26 15 16 N -0.31 -5.44 12.71 30.54 0.39 -5.06 15 17 C 0.05 0.87 12.00 -17.48 -0.21 0.66 15 18 C -0.22 -4.31 5.91 -105.05 -0.62 -4.93 15 19 C -0.05 -1.05 4.86 -27.63 -0.13 -1.18 15 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 21 H 0.07 1.23 8.11 -51.93 -0.42 0.81 15 22 H 0.06 1.10 8.11 -51.93 -0.42 0.68 15 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.18 2.65 8.06 -52.49 -0.42 2.22 15 26 H 0.07 1.55 8.12 -51.93 -0.42 1.13 15 27 H 0.05 1.18 3.66 -51.93 -0.19 0.99 15 LS Contribution 221.15 15.07 3.33 3.33 Total: -1.00 -31.17 221.15 -6.13 -37.31 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.33 Total: 0.14 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -2.42 Total: -19.79 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 1.41 Total: -38.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.13 Total: 17.72 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.17 -6.13 -37.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259599952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.831 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds