Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99481 * 2 1 4 4 H 1.48501 * 109.46935 * 270.00149 * 3 2 1 5 5 H 1.48502 * 109.47116 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.47288 * 150.00465 * 3 2 1 7 7 C 1.37869 * 120.00923 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99619 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00691 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.45492 * 59.98043 * 9 7 2 11 11 C 1.53103 * 109.46929 * 179.97438 * 9 7 2 12 12 C 1.53371 * 109.50232 * 190.29745 * 11 9 7 13 13 C 1.50816 * 108.38073 * 310.04963 * 12 11 9 14 14 N 1.34328 * 128.03499 * 196.65807 * 13 12 11 15 15 H 0.96996 * 126.08778 * 359.78772 * 14 13 12 16 16 N 1.40298 * 107.81765 * 179.78317 * 14 13 12 17 17 C 1.31070 * 108.26893 * 0.07172 * 16 14 13 18 18 C 1.35747 * 124.12251 * 16.54544 * 13 12 11 19 19 C 1.50839 * 124.11116 * 0.21014 * 18 13 12 20 20 H 0.96998 * 120.00734 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46721 * 310.30172 * 11 9 7 22 22 H 1.09002 * 109.46546 * 70.28087 * 11 9 7 23 23 H 1.09005 * 109.66790 * 190.33495 * 12 11 9 24 24 H 1.09000 * 109.72370 * 69.80337 * 12 11 9 25 25 H 1.07998 * 125.96176 * 179.97438 * 17 16 14 26 26 H 1.09004 * 109.68740 * 256.81037 * 19 18 13 27 27 H 1.08997 * 109.71636 * 136.27003 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6528 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 1 3.8750 -0.6798 0.8888 11 6 4.0220 -2.6373 -0.0010 12 6 5.5338 -2.6458 0.2569 13 6 6.1827 -1.6641 -0.6865 14 7 7.4806 -1.5707 -1.0197 15 1 8.1974 -2.1343 -0.6889 16 7 7.6146 -0.5129 -1.9315 17 6 6.4292 0.0086 -2.1330 18 6 5.5096 -0.6969 -1.3603 19 6 4.0222 -0.4701 -1.2532 20 1 -0.4851 0.8400 0.0004 21 1 3.5166 -3.2012 0.7831 22 1 3.8157 -3.0955 -0.9683 23 1 5.9310 -3.6449 0.0773 24 1 5.7329 -2.3514 1.2873 25 1 6.2046 0.8404 -2.7841 26 1 3.5251 -0.8705 -2.1369 27 1 3.8180 0.5972 -1.1692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259599952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = 39.811279 kcal Electronic energy + Delta-G solvation = -11897.483796 eV Core-core repulsion = 9848.369271 eV Total energy + Delta-G solvation = -2049.114524 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.37358 -37.84090 -34.48863 -33.39253 -30.76585 -30.41065 -26.38892 -24.36211 -22.91620 -21.83672 -19.53750 -18.76392 -18.34836 -16.41928 -16.09665 -15.28230 -15.00827 -14.83924 -14.48528 -14.04935 -13.77549 -13.43525 -12.93657 -12.61814 -12.27499 -11.83504 -11.63092 -11.42773 -11.04217 -10.96058 -10.61958 -10.39497 -9.16981 -8.25500 -6.28126 0.92172 1.35079 1.39766 1.49944 1.83460 1.99910 2.36796 3.10728 3.79823 3.90971 4.11515 4.23718 4.49246 4.65319 4.73732 4.80510 4.90894 4.98165 5.03586 5.21243 5.49339 5.55523 5.66098 5.77461 5.83399 6.37324 6.47065 6.73795 6.80264 7.37906 8.91322 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049904 B = 0.013708 C = 0.011441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.946498 B = 2042.118658 C = 2446.823109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.014 3.986 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.301 1.301 6 H -0.252 1.252 7 C -0.514 4.514 8 H 0.039 0.961 9 C 0.012 3.988 10 H 0.023 0.977 11 C -0.092 4.092 12 C -0.049 4.049 13 C 0.096 3.904 14 N -0.461 5.461 15 H 0.450 0.550 16 N -0.323 5.323 17 C 0.046 3.954 18 C -0.260 4.260 19 C -0.041 4.041 20 H 0.264 0.736 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.109 0.891 24 H 0.097 0.903 25 H 0.197 0.803 26 H 0.056 0.944 27 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.137 -2.922 -0.593 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.229 1.229 6 H -0.176 1.176 7 C -0.552 4.552 8 H 0.057 0.943 9 C -0.007 4.007 10 H 0.041 0.959 11 C -0.130 4.130 12 C -0.088 4.088 13 C -0.035 4.035 14 N -0.171 5.171 15 H 0.297 0.703 16 N -0.147 5.147 17 C -0.139 4.139 18 C -0.271 4.271 19 C -0.079 4.079 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.128 0.872 24 H 0.115 0.885 25 H 0.214 0.786 26 H 0.074 0.926 27 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.246 -2.747 -0.911 15.518 hybrid contribution -0.886 0.685 0.195 1.137 sum 14.359 -2.063 -0.716 14.524 Atomic orbital electron populations 1.70039 1.08110 1.27861 1.53149 1.25810 0.95291 1.02719 0.94429 0.85925 0.78866 0.79248 0.78884 1.19154 1.22863 1.17603 1.21424 0.91476 0.93003 1.49331 0.94252 1.19192 0.93310 0.94663 0.93494 0.95924 1.21392 0.93325 0.96751 1.01546 1.20493 0.94446 0.96898 0.96934 1.21261 0.84961 0.98597 0.98633 1.45938 1.07168 1.27963 1.36037 0.70280 1.77323 1.22408 1.03293 1.11641 1.23917 0.89699 1.00497 0.99739 1.20300 0.97363 1.02586 1.06839 1.20307 0.89175 0.98598 0.99811 0.92669 0.91237 0.92775 0.87243 0.88513 0.78643 0.92556 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.33 13.96 21.44 0.30 -59.03 15 2 C 0.01 0.83 5.45 84.65 0.46 1.29 15 3 Si 0.94 45.37 24.28 68.60 1.67 47.04 15 4 H -0.27 -12.18 6.96 99.48 0.69 -11.48 15 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 15 6 H -0.25 -11.49 6.51 99.48 0.65 -10.84 15 7 C -0.51 -28.73 9.10 25.60 0.23 -28.50 15 8 H 0.04 2.40 7.99 -2.91 -0.02 2.38 15 9 C 0.01 0.55 1.66 -11.38 -0.02 0.53 15 10 H 0.02 1.04 7.17 -2.39 -0.02 1.03 15 11 C -0.09 -3.27 5.15 30.75 0.16 -3.11 15 12 C -0.05 -1.29 6.30 30.01 0.19 -1.10 15 13 C 0.10 2.94 7.08 41.64 0.29 3.24 15 14 N -0.46 -12.24 7.34 -47.99 -0.35 -12.60 15 15 H 0.45 8.14 8.96 -213.20 -1.91 6.23 15 16 N -0.32 -10.19 12.71 -57.28 -0.73 -10.92 15 17 C 0.05 1.51 12.00 85.06 1.02 2.53 15 18 C -0.26 -9.45 5.91 -20.14 -0.12 -9.57 15 19 C -0.04 -1.73 4.86 30.01 0.15 -1.58 15 20 H 0.26 15.52 8.31 -92.71 -0.77 14.75 15 21 H 0.07 2.42 8.11 -2.39 -0.02 2.40 15 22 H 0.05 1.95 8.11 -2.39 -0.02 1.93 15 23 H 0.11 2.07 8.14 -2.38 -0.02 2.05 15 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.20 5.38 8.06 -2.91 -0.02 5.36 15 26 H 0.06 2.48 8.12 -2.38 -0.02 2.46 15 27 H 0.04 1.75 3.66 -2.39 -0.01 1.74 15 Total: -1.00 -67.68 221.15 2.45 -65.24 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -0.80 Total: 6.53 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 2.36 Total: -36.26 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -0.78 Total: -82.54 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -67.68 2.45 -65.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259599952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.050 kcal (2) G-P(sol) polarization free energy of solvation -67.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds