Wall clock time and date at job start Mon Mar 30 2020 02:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48502 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46777 * 300.00107 * 3 2 1 6 6 H 1.48498 * 109.47093 * 59.99796 * 3 2 1 7 7 C 1.37877 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47269 * 179.97438 * 9 7 2 11 11 N 1.30655 * 125.59047 * 90.02814 * 10 9 7 12 12 N 1.40115 * 109.06807 * 179.97438 * 11 10 9 13 13 H 0.96999 * 126.09841 * 179.97438 * 12 11 10 14 14 C 1.36714 * 107.79718 * 359.97438 * 12 11 10 15 15 C 1.41638 * 146.51060 * 180.02562 * 14 12 11 16 16 C 1.34244 * 107.11478 * 179.91825 * 15 14 12 17 17 O 1.34494 * 109.40036 * 0.03214 * 16 15 14 18 18 C 1.35070 * 109.69919 * 359.97438 * 17 16 15 19 19 H 0.96996 * 119.99864 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.47088 * 59.99656 * 9 7 2 21 21 H 1.09000 * 109.47291 * 300.00159 * 9 7 2 22 22 H 1.08009 * 126.44335 * 359.96542 * 15 14 12 23 23 H 1.08004 * 125.29714 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0005 11 7 2.7241 -4.2228 1.0630 12 7 3.5967 -5.2441 0.6645 13 1 4.0976 -5.8300 1.2534 14 6 3.6163 -5.2674 -0.7023 15 6 4.1405 -5.8817 -1.8658 16 6 3.6009 -5.2528 -2.9219 17 8 2.7735 -4.2843 -2.4903 18 6 2.7595 -4.2660 -1.1398 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 4.8420 -6.7025 -1.8975 23 1 3.8008 -5.4874 -3.9571 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259600005.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:25 Heat of formation + Delta-G solvation = 83.601861 kcal Electronic energy + Delta-G solvation = -11275.365574 eV Core-core repulsion = 9092.316857 eV Total energy + Delta-G solvation = -2183.048717 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.40335 -38.90339 -33.61599 -32.17036 -30.77552 -28.23462 -27.65529 -23.42817 -21.82804 -20.88595 -19.29620 -17.44070 -16.40043 -16.05464 -15.68767 -14.55270 -14.25599 -13.24337 -12.95951 -12.51203 -12.18926 -11.79768 -11.22035 -10.75923 -10.72813 -10.23950 -10.08478 -9.74357 -9.27202 -8.40099 -7.98109 -7.82018 -6.02387 -4.05050 1.72698 2.80698 2.92866 3.33512 3.35162 3.41539 3.48942 3.58001 4.48241 4.90695 5.14153 5.32843 5.60439 5.65765 5.77159 6.32298 6.54681 6.85966 7.44411 7.46556 7.61094 7.83107 7.93166 8.28622 8.33134 8.97010 9.57703 11.08341 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.052300 B = 0.010373 C = 0.009766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.239803 B = 2698.792780 C = 2866.366064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.083 3.917 10 C 0.170 3.830 11 N -0.262 5.262 12 N -0.488 5.488 13 H 0.435 0.565 14 C 0.021 3.979 15 C -0.217 4.217 16 C 0.014 3.986 17 O -0.156 6.156 18 C -0.085 4.085 19 H 0.262 0.738 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.149 0.851 23 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -10.097 -4.062 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.045 3.955 10 C -0.001 4.001 11 N -0.082 5.082 12 N -0.204 5.204 13 H 0.279 0.721 14 C -0.101 4.101 15 C -0.240 4.240 16 C -0.057 4.057 17 O -0.051 6.051 18 C -0.141 4.141 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.167 0.833 23 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.536 -9.791 -2.991 12.146 hybrid contribution 1.004 0.338 -0.557 1.197 sum 7.540 -9.453 -3.548 12.601 Atomic orbital electron populations 1.69957 1.05972 1.26837 1.50418 1.24957 0.94914 0.99226 0.95060 0.86418 0.80066 0.83252 0.77604 1.19740 1.20878 1.20875 1.20965 0.93096 0.89541 1.51188 0.92428 1.17996 0.91153 0.86907 0.99494 1.22574 0.97427 0.96343 0.83718 1.77324 1.08022 1.01880 1.20977 1.45111 1.41517 1.31956 1.01780 0.72141 1.19646 1.02513 1.00882 0.87048 1.20422 1.08597 1.06291 0.88719 1.24070 0.92816 0.89333 0.99477 1.84028 1.54556 1.47234 1.19252 1.20417 1.07688 1.03599 0.82427 0.92787 0.93745 0.93810 0.83293 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 14 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 14 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 14 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 14 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 14 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 14 7 C -0.51 -14.80 9.09 -34.44 -0.31 -15.11 14 8 H 0.06 1.69 7.74 -52.48 -0.41 1.28 14 9 C 0.08 2.27 5.53 -29.04 -0.16 2.11 14 10 C 0.17 4.14 6.38 -82.35 -0.53 3.62 14 11 N -0.26 -5.92 12.64 33.71 0.43 -5.49 14 12 N -0.49 -8.90 7.44 32.39 0.24 -8.65 14 13 H 0.44 5.97 8.96 -182.59 -1.64 4.33 14 14 C 0.02 0.39 8.21 -84.16 -0.69 -0.30 14 15 C -0.22 -3.11 10.89 -39.69 -0.43 -3.54 14 16 C 0.01 0.20 12.01 29.32 0.35 0.55 14 17 O -0.16 -3.08 10.68 3.03 0.03 -3.04 14 18 C -0.08 -1.87 8.14 -38.60 -0.31 -2.18 14 19 H 0.26 7.32 8.31 -40.82 -0.34 6.98 14 20 H 0.04 1.24 8.14 -51.93 -0.42 0.82 14 21 H 0.04 1.23 8.14 -51.93 -0.42 0.80 14 22 H 0.15 1.55 8.06 -52.48 -0.42 1.13 14 23 H 0.21 1.71 8.06 -52.48 -0.42 1.29 14 LS Contribution 218.04 15.07 3.29 3.29 Total: -1.00 -33.03 218.04 -5.35 -38.38 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -2.87 Total: -2.34 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.18 Total: -13.23 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 1.40 Total: -40.00 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: 0.03 Total: -3.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -33.03 -5.35 -38.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259600005.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.980 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds