Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48502 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46777 * 300.00107 * 3 2 1 6 6 H 1.48498 * 109.47093 * 59.99796 * 3 2 1 7 7 C 1.37877 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99998 * 0.02562 * 7 2 1 10 10 C 1.50694 * 109.47269 * 179.97438 * 9 7 2 11 11 N 1.30655 * 125.59047 * 90.02814 * 10 9 7 12 12 N 1.40115 * 109.06807 * 179.97438 * 11 10 9 13 13 H 0.96999 * 126.09841 * 179.97438 * 12 11 10 14 14 C 1.36714 * 107.79718 * 359.97438 * 12 11 10 15 15 C 1.41638 * 146.51060 * 180.02562 * 14 12 11 16 16 C 1.34244 * 107.11478 * 179.91825 * 15 14 12 17 17 O 1.34494 * 109.40036 * 0.03214 * 16 15 14 18 18 C 1.35070 * 109.69919 * 359.97438 * 17 16 15 19 19 H 0.96996 * 119.99864 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.47088 * 59.99656 * 9 7 2 21 21 H 1.09000 * 109.47291 * 300.00159 * 9 7 2 22 22 H 1.08009 * 126.44335 * 359.96542 * 15 14 12 23 23 H 1.08004 * 125.29714 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0005 11 7 2.7241 -4.2228 1.0630 12 7 3.5967 -5.2441 0.6645 13 1 4.0976 -5.8300 1.2534 14 6 3.6163 -5.2674 -0.7023 15 6 4.1405 -5.8817 -1.8658 16 6 3.6009 -5.2528 -2.9219 17 8 2.7735 -4.2843 -2.4903 18 6 2.7595 -4.2660 -1.1398 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 4.8420 -6.7025 -1.8975 23 1 3.8008 -5.4874 -3.9571 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259600005.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 59.335903 kcal Electronic energy + Delta-G solvation = -11276.417825 eV Core-core repulsion = 9092.316857 eV Total energy + Delta-G solvation = -2184.100968 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.81777 -40.43510 -35.65469 -33.83448 -32.39307 -29.70033 -29.61021 -25.55212 -23.15822 -22.35054 -20.92876 -18.90282 -18.57949 -17.49801 -17.20980 -16.57837 -15.49245 -14.88387 -14.67102 -14.21178 -13.85706 -13.69278 -13.05337 -12.69479 -12.53852 -12.05959 -11.81657 -11.76622 -11.08770 -10.62399 -9.43037 -9.35477 -8.23195 -6.36006 0.33653 1.39479 1.40540 1.41585 1.53787 1.65250 1.69665 2.26081 2.42265 3.08544 3.66893 3.68258 4.11970 4.40278 4.66058 4.85312 5.06471 5.23168 5.32849 5.53652 5.67922 6.05252 6.17799 6.46077 6.68933 6.71205 7.31458 8.87937 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.052300 B = 0.010373 C = 0.009766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.239803 B = 2698.792780 C = 2866.366064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.094 3.906 10 C 0.139 3.861 11 N -0.288 5.288 12 N -0.467 5.467 13 H 0.455 0.545 14 C 0.037 3.963 15 C -0.215 4.215 16 C 0.037 3.963 17 O -0.187 6.187 18 C -0.141 4.141 19 H 0.269 0.731 20 H 0.021 0.979 21 H 0.018 0.982 22 H 0.198 0.802 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -11.010 -5.325 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.066 0.934 9 C 0.055 3.945 10 C -0.031 4.031 11 N -0.109 5.109 12 N -0.186 5.186 13 H 0.303 0.697 14 C -0.086 4.086 15 C -0.237 4.237 16 C -0.032 4.032 17 O -0.083 6.083 18 C -0.197 4.197 19 H 0.078 0.922 20 H 0.040 0.960 21 H 0.037 0.963 22 H 0.215 0.785 23 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 8.703 -10.725 -4.228 14.445 hybrid contribution 0.374 0.477 -0.244 0.654 sum 9.077 -10.248 -4.472 14.402 Atomic orbital electron populations 1.70067 1.07531 1.28224 1.50604 1.25896 0.95888 1.03043 0.94148 0.85296 0.78549 0.78275 0.78278 1.19414 1.19582 1.19761 1.21175 0.92776 0.90939 1.52035 0.93364 1.17607 0.91472 0.88368 0.97074 1.22015 0.98398 0.96719 0.85953 1.77160 1.09369 1.03350 1.21042 1.45058 1.40229 1.30787 1.02494 0.69690 1.20254 1.01127 0.99778 0.87449 1.21013 1.09180 1.07294 0.86205 1.25381 0.89491 0.86302 1.02059 1.84009 1.56567 1.49607 1.18149 1.20361 1.10148 1.05665 0.83510 0.92208 0.96035 0.96325 0.78452 0.71799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.59 13.29 21.45 0.28 -56.31 14 2 C 0.01 0.54 5.46 84.65 0.46 1.00 14 3 Si 0.97 45.55 29.54 68.60 2.03 47.58 14 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 14 5 H -0.27 -12.09 7.11 99.48 0.71 -11.39 14 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 14 7 C -0.53 -32.16 9.09 25.60 0.23 -31.93 14 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 14 9 C 0.09 5.44 5.53 29.10 0.16 5.60 14 10 C 0.14 7.05 6.38 43.22 0.28 7.33 14 11 N -0.29 -13.34 12.64 -47.25 -0.60 -13.94 14 12 N -0.47 -16.53 7.44 -51.45 -0.38 -16.92 14 13 H 0.46 11.60 8.96 -213.31 -1.91 9.69 14 14 C 0.04 1.31 8.21 39.37 0.32 1.64 14 15 C -0.21 -5.17 10.89 22.20 0.24 -4.93 14 16 C 0.04 0.89 12.01 66.91 0.80 1.69 14 17 O -0.19 -7.21 10.68 -12.06 -0.13 -7.34 14 18 C -0.14 -6.29 8.14 22.90 0.19 -6.10 14 19 H 0.27 15.23 8.31 -92.71 -0.77 14.46 14 20 H 0.02 1.30 8.14 -2.38 -0.02 1.28 14 21 H 0.02 1.13 8.14 -2.39 -0.02 1.11 14 22 H 0.20 2.79 8.06 -2.91 -0.02 2.76 14 23 H 0.27 2.71 8.06 -2.91 -0.02 2.69 14 Total: -1.00 -75.56 218.04 3.22 -72.35 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -0.67 Total: 0.28 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 2.69 Total: -25.70 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -0.70 Total: -87.17 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.13 Total: -7.34 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.56 3.22 -72.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259600005.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.681 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds