Wall clock time and date at job start Mon Mar 30 2020 02:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47198 * 30.00071 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99973 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.38668 * 120.41523 * 100.00282 * 13 10 9 15 15 C 1.38632 * 118.41832 * 180.02562 * 14 13 10 16 16 C 1.38217 * 119.16199 * 359.97438 * 15 14 13 17 17 N 1.31855 * 120.76304 * 0.02562 * 16 15 14 18 18 C 1.31883 * 121.72775 * 359.70486 * 17 16 15 19 19 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 21 21 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 22 22 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 23 23 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 24 24 H 1.08003 * 120.79282 * 359.97438 * 14 13 10 25 25 H 1.08001 * 120.41715 * 180.02562 * 15 14 13 26 26 H 1.08007 * 119.62154 * 179.97438 * 16 15 14 27 27 H 1.07999 * 119.62299 * 180.31527 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.4048 -5.6085 -1.3442 15 6 0.7050 -6.8034 -1.4100 16 6 0.1262 -7.3091 -0.2612 17 7 0.2336 -6.6685 0.8863 18 6 0.8959 -5.5325 0.9871 19 1 -0.4850 0.8400 -0.0004 20 1 0.6242 -2.5575 -0.8880 21 1 0.6248 -2.5563 0.8920 22 1 3.5701 -2.8178 1.3336 23 1 2.3962 -3.7498 2.0540 24 1 1.8670 -5.1893 -2.2257 25 1 0.6140 -7.3329 -2.3469 26 1 -0.4210 -8.2393 -0.3040 27 1 0.9666 -5.0390 1.9452 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259663294.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:33 Heat of formation + Delta-G solvation = -1.325397 kcal Electronic energy + Delta-G solvation = -11405.633380 eV Core-core repulsion = 9354.735036 eV Total energy + Delta-G solvation = -2050.898345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.09643 -37.42089 -34.62793 -33.17746 -31.42998 -29.95413 -26.53684 -24.45029 -24.09343 -21.48183 -18.81817 -17.99071 -17.32403 -16.63064 -16.25785 -15.58172 -15.08343 -14.76170 -14.31228 -14.13909 -13.91264 -13.70369 -12.88796 -12.85909 -12.38654 -12.27921 -11.92357 -11.29405 -10.70737 -10.60152 -10.32150 -9.91465 -9.37168 -8.23682 -6.36328 0.27874 0.41491 1.40335 1.40539 1.51643 2.37910 2.94952 3.10020 3.58960 3.76455 4.03304 4.11709 4.21952 4.27759 4.60267 4.73047 4.82884 4.94360 5.23239 5.30715 5.36949 5.61222 5.72357 5.85095 6.12331 6.33645 6.66983 6.80226 7.08513 7.34356 8.87637 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066241 B = 0.008590 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.597764 B = 3258.988834 C = 3338.478631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.010 3.990 10 C 0.143 3.857 11 H 0.078 0.922 12 N -0.829 5.829 13 C -0.121 4.121 14 C -0.088 4.088 15 C -0.162 4.162 16 C 0.073 3.927 17 N -0.509 5.509 18 C 0.089 3.911 19 H 0.263 0.737 20 H -0.013 1.013 21 H -0.009 1.009 22 H 0.348 0.652 23 H 0.334 0.666 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.185 0.815 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.131 -9.992 -2.155 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.574 4.574 8 H 0.087 0.913 9 C -0.028 4.028 10 C 0.031 3.969 11 H 0.096 0.904 12 N -0.358 5.358 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.182 4.182 16 C -0.084 4.084 17 N -0.218 5.218 18 C -0.067 4.067 19 H 0.072 0.928 20 H 0.005 0.995 21 H 0.009 0.991 22 H 0.161 0.839 23 H 0.146 0.854 24 H 0.163 0.837 25 H 0.188 0.812 26 H 0.202 0.798 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.963 -10.896 -1.676 11.416 hybrid contribution -0.191 2.406 -0.484 2.461 sum 2.773 -8.490 -2.160 9.189 Atomic orbital electron populations 1.70114 1.07998 1.27789 1.51425 1.25958 0.95604 1.03385 0.94614 0.85440 0.78784 0.78424 0.78352 1.20064 1.21300 1.18229 1.21554 0.93599 0.91527 1.50746 0.91314 1.19678 0.94577 0.93572 0.94988 1.20206 0.93387 0.89490 0.93824 0.90408 1.59267 1.27514 1.45651 1.03363 1.21063 0.98883 0.97135 0.95272 1.21797 0.97345 0.95010 0.97336 1.22453 0.98052 0.96289 1.01357 1.23309 0.97294 1.00019 0.87756 1.67650 1.16140 1.08646 1.29355 1.22472 0.93601 0.92030 0.98647 0.92849 0.99471 0.99070 0.83894 0.85386 0.83660 0.81194 0.79774 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.44 0.28 -55.66 15 2 C 0.00 0.14 5.46 84.65 0.46 0.60 15 3 Si 0.97 42.91 29.54 68.60 2.03 44.94 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 7 C -0.54 -28.71 8.55 25.60 0.22 -28.49 15 8 H 0.07 3.45 7.14 -2.91 -0.02 3.43 15 9 C 0.01 0.53 4.60 29.85 0.14 0.67 15 10 C 0.14 5.77 3.01 44.17 0.13 5.90 15 11 H 0.08 3.11 8.03 -2.39 -0.02 3.09 15 12 N -0.83 -30.31 9.02 -171.79 -1.55 -31.86 15 13 C -0.12 -4.43 4.97 -19.77 -0.10 -4.53 15 14 C -0.09 -2.72 9.82 22.47 0.22 -2.50 15 15 C -0.16 -4.05 10.11 22.36 0.23 -3.82 15 16 C 0.07 1.97 11.18 84.68 0.95 2.91 15 17 N -0.51 -17.29 10.36 -195.85 -2.03 -19.32 15 18 C 0.09 3.23 10.47 84.67 0.89 4.11 15 19 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 20 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 15 21 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 22 H 0.35 12.75 7.90 -89.69 -0.71 12.04 15 23 H 0.33 11.82 7.37 -89.70 -0.66 11.16 15 24 H 0.15 3.94 8.06 -2.91 -0.02 3.91 15 25 H 0.17 2.78 8.06 -2.91 -0.02 2.76 15 26 H 0.19 3.44 8.06 -2.91 -0.02 3.41 15 27 H 0.15 5.16 6.67 -2.91 -0.02 5.14 15 Total: -1.00 -64.26 237.58 1.68 -62.58 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.19 Total: 24.45 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.13 Total: -25.14 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.29 Total: -106.83 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -64.26 1.68 -62.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259663294.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.255 kcal (2) G-P(sol) polarization free energy of solvation -64.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds