Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47393 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47314 * 299.99876 * 3 2 1 6 6 H 1.48504 * 109.47165 * 59.99931 * 3 2 1 7 7 C 1.37873 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00123 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.51980 * 299.92106 * 9 7 2 11 11 C 1.53219 * 109.56063 * 179.80878 * 9 7 2 12 12 C 1.53280 * 109.72846 * 170.16351 * 11 9 7 13 13 N 1.46470 * 108.69447 * 50.77061 * 12 11 9 14 14 C 1.34410 * 128.44134 * 162.61998 * 13 12 11 15 15 N 1.30787 * 108.55010 * 180.20755 * 14 13 12 16 16 C 1.34421 * 109.32269 * 359.94672 * 15 14 13 17 17 C 1.33864 * 107.79916 * 359.97438 * 16 15 14 18 18 C 1.50711 * 128.68104 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99804 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.41698 * 50.08326 * 11 9 7 21 21 H 1.09000 * 109.42367 * 290.24080 * 11 9 7 22 22 H 1.09002 * 109.59831 * 291.01357 * 12 11 9 23 23 H 1.09001 * 109.73113 * 170.61684 * 12 11 9 24 24 H 1.07999 * 125.72613 * 0.18534 * 14 13 12 25 25 H 1.08000 * 126.10098 * 180.02562 * 16 15 14 26 26 H 1.09002 * 109.74527 * 283.93016 * 18 17 16 27 27 H 1.09000 * 109.74408 * 44.60102 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6253 -2.5586 0.8902 11 6 2.2448 -3.6653 -0.0060 12 6 1.4992 -4.9817 0.2404 13 7 0.3700 -5.0628 -0.6888 14 6 -0.3442 -6.1447 -1.0437 15 7 -1.2600 -5.7758 -1.9015 16 6 -1.1593 -4.4530 -2.1182 17 6 -0.1498 -3.9914 -1.3700 18 6 0.3680 -2.5809 -1.2536 19 1 -0.4850 0.8401 0.0004 20 1 2.9844 -3.5147 0.7803 21 1 2.7474 -3.7087 -0.9722 22 1 1.1311 -5.0070 1.2661 23 1 2.1721 -5.8227 0.0726 24 1 -0.1879 -7.1501 -0.6815 25 1 -1.7822 -3.8670 -2.7777 26 1 0.9571 -2.3308 -2.1359 27 1 -0.4684 -1.8881 -1.1609 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259783314.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = 46.390408 kcal Electronic energy + Delta-G solvation = -11878.641112 eV Core-core repulsion = 9829.811880 eV Total energy + Delta-G solvation = -2048.829232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.56081 -36.08486 -33.20822 -31.25368 -29.72487 -27.27104 -24.86374 -23.08217 -20.93909 -20.46418 -18.10572 -16.50419 -16.36976 -15.10719 -14.54282 -13.45922 -13.25953 -13.06825 -12.87785 -12.73182 -12.34561 -11.46242 -11.18831 -11.00784 -10.62375 -10.49747 -9.93538 -9.51178 -9.37486 -8.92478 -8.85542 -8.50970 -7.54688 -6.11381 -4.18461 2.79930 3.23806 3.32626 3.35325 3.48268 3.79600 4.34431 5.18248 5.18860 5.23725 5.40124 5.61500 5.66328 6.13054 6.23757 6.36739 6.45842 6.66250 6.85848 6.86631 7.30325 7.41477 7.59300 7.72606 7.88311 7.95503 8.25193 8.69017 8.84884 9.47722 10.95696 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066200 B = 0.010916 C = 0.009741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.856682 B = 2564.416557 C = 2873.890301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.046 3.954 10 H 0.030 0.970 11 C -0.125 4.125 12 C 0.104 3.896 13 N -0.455 5.455 14 C 0.151 3.849 15 N -0.504 5.504 16 C -0.060 4.060 17 C 0.016 3.984 18 C -0.043 4.043 19 H 0.262 0.738 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.194 0.806 25 H 0.162 0.838 26 H 0.062 0.938 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 -6.602 0.131 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.028 3.972 10 H 0.048 0.952 11 C -0.163 4.163 12 C -0.018 4.018 13 N -0.139 5.139 14 C -0.130 4.130 15 N -0.223 5.223 16 C -0.206 4.206 17 C -0.100 4.100 18 C -0.081 4.081 19 H 0.072 0.928 20 H 0.092 0.908 21 H 0.077 0.923 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.211 0.789 25 H 0.179 0.821 26 H 0.080 0.920 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.021 -7.026 -0.130 7.312 hybrid contribution 0.993 1.313 0.436 1.702 sum 3.014 -5.713 0.306 6.466 Atomic orbital electron populations 1.69892 1.05919 1.26721 1.50003 1.24988 0.94882 0.99257 0.94732 0.86509 0.80062 0.83601 0.77680 1.19785 1.20900 1.20989 1.21128 0.92946 0.90140 1.51546 0.92339 1.18785 0.92419 0.91878 0.94139 0.95235 1.22032 0.99339 0.93148 1.01785 1.22056 0.86632 1.00838 0.92294 1.45456 1.26231 1.08151 1.34080 1.24493 0.94148 0.93392 1.00988 1.70331 1.22199 1.13242 1.16520 1.21719 1.01639 0.91244 1.05977 1.22190 0.98047 0.92303 0.97451 1.20573 1.01590 0.86177 0.99776 0.92771 0.90798 0.92304 0.90577 0.90582 0.78925 0.82060 0.92002 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 11.49 55.43 0.64 -23.75 15 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 3 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 7 C -0.52 -13.46 8.53 -34.44 -0.29 -13.75 15 8 H 0.06 1.49 7.75 -52.49 -0.41 1.08 15 9 C 0.05 1.09 2.13 -91.39 -0.19 0.90 15 10 H 0.03 0.77 8.12 -51.93 -0.42 0.35 15 11 C -0.13 -2.36 5.17 -26.47 -0.14 -2.50 15 12 C 0.10 1.67 7.00 -3.91 -0.03 1.64 15 13 N -0.45 -8.56 3.13 -114.09 -0.36 -8.91 15 14 C 0.15 2.68 12.66 -90.71 -1.15 1.53 15 15 N -0.50 -10.23 11.27 -14.87 -0.17 -10.39 15 16 C -0.06 -1.25 11.84 -17.95 -0.21 -1.46 15 17 C 0.02 0.33 6.57 -81.73 -0.54 -0.21 15 18 C -0.04 -0.99 5.18 -27.62 -0.14 -1.13 15 19 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 20 H 0.07 1.30 8.11 -51.93 -0.42 0.88 15 21 H 0.06 1.12 8.11 -51.93 -0.42 0.70 15 22 H 0.08 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.19 2.52 8.06 -52.49 -0.42 2.10 15 25 H 0.16 3.05 8.06 -52.49 -0.42 2.62 15 26 H 0.06 1.44 8.11 -51.93 -0.42 1.02 15 27 H 0.11 2.74 6.51 -51.93 -0.34 2.40 15 LS Contribution 228.55 15.07 3.44 3.44 Total: -1.00 -29.01 228.55 -7.51 -36.52 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.26 Total: 1.08 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.79 Total: -13.39 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.11 Total: -43.06 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.01 -7.51 -36.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783314.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.908 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds