Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47393 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47314 * 299.99876 * 3 2 1 6 6 H 1.48504 * 109.47165 * 59.99931 * 3 2 1 7 7 C 1.37873 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00123 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.51980 * 299.92106 * 9 7 2 11 11 C 1.53219 * 109.56063 * 179.80878 * 9 7 2 12 12 C 1.53280 * 109.72846 * 170.16351 * 11 9 7 13 13 N 1.46470 * 108.69447 * 50.77061 * 12 11 9 14 14 C 1.34410 * 128.44134 * 162.61998 * 13 12 11 15 15 N 1.30787 * 108.55010 * 180.20755 * 14 13 12 16 16 C 1.34421 * 109.32269 * 359.94672 * 15 14 13 17 17 C 1.33864 * 107.79916 * 359.97438 * 16 15 14 18 18 C 1.50711 * 128.68104 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99804 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.41698 * 50.08326 * 11 9 7 21 21 H 1.09000 * 109.42367 * 290.24080 * 11 9 7 22 22 H 1.09002 * 109.59831 * 291.01357 * 12 11 9 23 23 H 1.09001 * 109.73113 * 170.61684 * 12 11 9 24 24 H 1.07999 * 125.72613 * 0.18534 * 14 13 12 25 25 H 1.08000 * 126.10098 * 180.02562 * 16 15 14 26 26 H 1.09002 * 109.74527 * 283.93016 * 18 17 16 27 27 H 1.09000 * 109.74408 * 44.60102 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6253 -2.5586 0.8902 11 6 2.2448 -3.6653 -0.0060 12 6 1.4992 -4.9817 0.2404 13 7 0.3700 -5.0628 -0.6888 14 6 -0.3442 -6.1447 -1.0437 15 7 -1.2600 -5.7758 -1.9015 16 6 -1.1593 -4.4530 -2.1182 17 6 -0.1498 -3.9914 -1.3700 18 6 0.3680 -2.5809 -1.2536 19 1 -0.4850 0.8401 0.0004 20 1 2.9844 -3.5147 0.7803 21 1 2.7474 -3.7087 -0.9722 22 1 1.1311 -5.0070 1.2661 23 1 2.1721 -5.8227 0.0726 24 1 -0.1879 -7.1501 -0.6815 25 1 -1.7822 -3.8670 -2.7777 26 1 0.9571 -2.3308 -2.1359 27 1 -0.4684 -1.8881 -1.1609 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783314.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = 30.296386 kcal Electronic energy + Delta-G solvation = -11879.339001 eV Core-core repulsion = 9829.811880 eV Total energy + Delta-G solvation = -2049.527121 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.06314 -37.74300 -34.95195 -33.04870 -31.29394 -28.91443 -26.71957 -24.65687 -22.50080 -22.07627 -19.71149 -18.38952 -17.90795 -16.70310 -16.32547 -14.98450 -14.85221 -14.77256 -14.52126 -14.34019 -13.85354 -13.22149 -12.91956 -12.69038 -12.50516 -12.30100 -11.66842 -11.22546 -11.06825 -10.74626 -10.50642 -10.29790 -9.14833 -8.12510 -6.26575 1.28753 1.41738 1.44656 1.54872 2.08573 2.26416 2.42691 3.16379 3.86388 3.90341 4.05504 4.14625 4.35670 4.54319 4.71591 4.78298 4.92895 4.94269 5.10558 5.25014 5.55028 5.68377 5.72569 5.90715 6.00371 6.27523 6.52521 6.84858 7.19098 7.43090 8.93470 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066200 B = 0.010916 C = 0.009741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.856682 B = 2564.416557 C = 2873.890301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.043 3.957 10 H -0.003 1.003 11 C -0.119 4.119 12 C 0.105 3.895 13 N -0.458 5.458 14 C 0.175 3.825 15 N -0.533 5.533 16 C -0.067 4.067 17 C -0.015 4.015 18 C -0.028 4.028 19 H 0.262 0.738 20 H 0.087 0.913 21 H 0.056 0.944 22 H 0.088 0.912 23 H 0.124 0.876 24 H 0.245 0.755 25 H 0.166 0.834 26 H 0.049 0.951 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -8.174 0.590 9.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.024 3.976 10 H 0.015 0.985 11 C -0.157 4.157 12 C -0.016 4.016 13 N -0.141 5.141 14 C -0.107 4.107 15 N -0.253 5.253 16 C -0.213 4.213 17 C -0.130 4.130 18 C -0.067 4.067 19 H 0.071 0.929 20 H 0.106 0.894 21 H 0.075 0.925 22 H 0.107 0.893 23 H 0.142 0.858 24 H 0.261 0.739 25 H 0.183 0.817 26 H 0.067 0.933 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.314 -8.597 0.335 9.220 hybrid contribution 0.585 1.743 0.313 1.865 sum 3.899 -6.854 0.648 7.912 Atomic orbital electron populations 1.70037 1.07303 1.27306 1.51012 1.25769 0.95608 1.02569 0.94599 0.85536 0.79201 0.79656 0.77437 1.18834 1.20869 1.20864 1.21532 0.93264 0.91491 1.50936 0.92130 1.18734 0.92944 0.93284 0.92647 0.98521 1.21883 0.98590 0.92924 1.02260 1.22249 0.86294 1.00665 0.92343 1.45642 1.26856 1.07594 1.34034 1.25501 0.91909 0.94680 0.98575 1.70358 1.23908 1.12645 1.18347 1.21920 1.01478 0.91983 1.05876 1.21851 0.99464 0.92125 0.99599 1.20163 1.00129 0.87292 0.99119 0.92932 0.89420 0.92489 0.89345 0.85831 0.73859 0.81659 0.93298 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.99 11.49 21.45 0.25 -51.74 15 2 C 0.01 0.74 5.30 84.65 0.45 1.18 15 3 Si 0.96 42.23 29.54 68.60 2.03 44.26 15 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.53 -27.95 8.53 25.60 0.22 -27.73 15 8 H 0.06 3.06 7.75 -2.91 -0.02 3.04 15 9 C 0.04 2.03 2.13 -11.29 -0.02 2.01 15 10 H 0.00 -0.18 8.12 -2.38 -0.02 -0.20 15 11 C -0.12 -4.28 5.17 30.76 0.16 -4.12 15 12 C 0.11 3.01 7.00 86.48 0.61 3.61 15 13 N -0.46 -16.04 3.13 -514.86 -1.61 -17.65 15 14 C 0.18 5.56 12.66 180.38 2.28 7.84 15 15 N -0.53 -20.62 11.27 -200.97 -2.26 -22.88 15 16 C -0.07 -2.77 11.84 83.30 0.99 -1.79 15 17 C -0.01 -0.62 6.57 40.73 0.27 -0.36 15 18 C -0.03 -1.34 5.18 30.02 0.16 -1.19 15 19 H 0.26 14.14 8.31 -92.70 -0.77 13.37 15 20 H 0.09 2.89 8.11 -2.39 -0.02 2.87 15 21 H 0.06 2.06 8.11 -2.39 -0.02 2.05 15 22 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.12 2.45 8.14 -2.39 -0.02 2.43 15 24 H 0.25 4.91 8.06 -2.91 -0.02 4.89 15 25 H 0.17 6.40 8.06 -2.91 -0.02 6.37 15 26 H 0.05 2.38 8.11 -2.39 -0.02 2.36 15 27 H 0.07 3.97 6.51 -2.39 -0.02 3.96 15 Total: -1.00 -63.54 228.55 4.65 -58.90 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.15 Total: 9.66 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 5.10 Total: -20.54 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -3.63 Total: -92.28 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -63.54 4.65 -58.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783314.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.192 kcal (2) G-P(sol) polarization free energy of solvation -63.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds