Wall clock time and date at job start Mon Mar 30 2020 02:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48500 * 109.46763 * 271.66309 * 3 2 1 5 5 H 1.48497 * 109.47170 * 31.66366 * 3 2 1 6 6 H 1.48498 * 109.47117 * 151.66768 * 3 2 1 7 7 C 1.37876 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00502 * 355.85894 * 7 2 1 9 9 C 1.50707 * 119.99695 * 175.86022 * 7 2 1 10 10 C 1.53000 * 115.54996 * 89.82219 * 9 7 2 11 11 C 1.50704 * 109.46995 * 39.62875 * 10 9 7 12 12 C 1.34508 * 125.78869 * 84.78055 * 11 10 9 13 13 C 1.41379 * 106.84057 * 179.75038 * 12 11 10 14 14 C 1.34515 * 106.84323 * 0.36405 * 13 12 11 15 15 O 1.34296 * 125.78888 * 264.74783 * 11 10 9 16 16 C 1.53002 * 117.51593 * 235.52166 * 9 7 2 17 17 C 1.52993 * 59.99843 * 107.48159 * 16 9 7 18 18 H 0.96999 * 119.99645 * 0.02562 * 1 2 3 19 19 H 1.09003 * 109.47048 * 279.62710 * 10 9 7 20 20 H 1.09001 * 109.47014 * 159.62873 * 10 9 7 21 21 H 1.07999 * 126.58293 * 359.97438 * 12 11 10 22 22 H 1.08001 * 126.58188 * 180.23515 * 13 12 11 23 23 H 1.08001 * 125.79584 * 179.89220 * 14 13 12 24 24 H 1.08998 * 117.49847 * 214.97334 * 16 9 7 25 25 H 1.08999 * 117.49815 * 359.97438 * 16 9 7 26 26 H 1.09007 * 117.49911 * 252.50491 * 17 16 9 27 27 H 1.08999 * 117.49736 * 107.48916 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4614 2.0667 -1.3995 5 1 1.4647 2.6422 0.7349 6 1 3.5639 1.4303 0.6644 7 6 2.0045 -1.1941 0.0005 8 1 1.4667 -2.1281 0.0685 9 6 3.5087 -1.1957 -0.0937 10 6 4.2535 -1.1418 1.2416 11 6 3.5435 -2.0097 2.2484 12 6 3.7115 -3.3355 2.4014 13 6 2.8591 -3.7375 3.4553 14 6 2.2151 -2.6347 3.8779 15 8 2.6360 -1.5907 3.1453 16 6 4.1451 -2.0050 -1.2255 17 6 4.1426 -0.4763 -1.2859 18 1 -0.4849 0.8401 -0.0004 19 1 4.2789 -0.1134 1.6022 20 1 5.2724 -1.5038 1.1042 21 1 4.3735 -3.9704 1.8313 22 1 2.7452 -4.7383 3.8448 23 1 1.4866 -2.5948 4.6742 24 1 5.0945 -2.4990 -1.0187 25 1 3.4759 -2.5368 -1.9019 26 1 3.4718 -0.0020 -2.0023 27 1 5.0903 0.0355 -1.1189 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799024.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:03 Heat of formation + Delta-G solvation = 37.802284 kcal Electronic energy + Delta-G solvation = -11945.639799 eV Core-core repulsion = 9864.145407 eV Total energy + Delta-G solvation = -2081.494392 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.68831 -37.05269 -32.22153 -32.00556 -30.58065 -26.20733 -25.14565 -21.64116 -20.89260 -20.02947 -18.90782 -16.82786 -15.85292 -15.15536 -14.81005 -14.02310 -13.61846 -12.86173 -12.52804 -12.23615 -12.04197 -11.91144 -11.53092 -11.05274 -10.50177 -10.34505 -10.15895 -9.66398 -9.12357 -9.01633 -8.55036 -8.40782 -7.54913 -6.05401 -4.07579 2.61303 3.31983 3.39306 3.41138 3.44098 3.87277 4.46592 4.91981 5.22912 5.51171 5.73125 5.74446 5.87662 5.98089 6.17002 6.22906 6.45446 6.48375 6.53870 6.67438 6.73495 6.86995 7.11740 7.13765 7.36037 7.77277 8.03129 8.55161 8.98693 9.58090 11.06949 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.035436 B = 0.017023 C = 0.013889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.970423 B = 1644.395788 C = 2015.543721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.481 4.481 8 H 0.076 0.924 9 C 0.005 3.995 10 C -0.020 4.020 11 C 0.062 3.938 12 C -0.241 4.241 13 C -0.216 4.216 14 C -0.060 4.060 15 O -0.163 6.163 16 C -0.180 4.180 17 C -0.202 4.202 18 H 0.263 0.737 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.136 0.864 22 H 0.136 0.864 23 H 0.190 0.810 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -2.668 4.123 9.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.122 4.122 3 Si 0.707 3.293 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.057 4.057 11 C 0.011 3.989 12 C -0.260 4.260 13 C -0.235 4.235 14 C -0.128 4.128 15 O -0.058 6.058 16 C -0.217 4.217 17 C -0.239 4.239 18 H 0.073 0.927 19 H 0.092 0.908 20 H 0.090 0.910 21 H 0.154 0.846 22 H 0.154 0.846 23 H 0.207 0.793 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.433 -2.250 4.157 8.808 hybrid contribution 0.223 0.604 -0.058 0.647 sum 7.656 -1.646 4.099 8.839 Atomic orbital electron populations 1.69901 1.06383 1.26943 1.50239 1.24947 0.94535 0.98914 0.93827 0.86874 0.80665 0.83545 0.78169 1.20582 1.22159 1.18257 1.20197 0.86345 0.94493 1.50800 0.90614 1.19362 0.95424 0.99797 0.85009 1.20144 0.95492 0.97850 0.92223 1.22145 0.91239 0.94097 0.91403 1.21284 1.06891 0.94658 1.03135 1.21599 1.01855 0.99096 1.00996 1.23730 1.03396 0.85646 1.00030 1.84059 1.46369 1.36439 1.38919 1.22889 1.00860 0.92901 1.05059 1.22981 1.01329 0.94896 1.04680 0.92689 0.90782 0.91019 0.84597 0.84632 0.79292 0.90938 0.89555 0.89345 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.88 15 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 15 3 Si 0.88 21.90 25.03 -169.99 -4.26 17.65 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 6 H -0.26 -6.01 5.41 56.52 0.31 -5.71 15 7 C -0.48 -13.53 8.33 -34.44 -0.29 -13.82 15 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 15 9 C 0.01 0.12 1.10 -155.66 -0.17 -0.05 15 10 C -0.02 -0.41 5.72 -27.88 -0.16 -0.57 15 11 C 0.06 1.35 5.54 -35.62 -0.20 1.15 15 12 C -0.24 -4.71 10.81 -39.71 -0.43 -5.14 15 13 C -0.22 -3.89 10.91 -39.70 -0.43 -4.32 15 14 C -0.06 -1.12 12.09 29.42 0.36 -0.76 15 15 O -0.16 -3.66 10.65 5.71 0.06 -3.60 15 16 C -0.18 -3.65 9.88 -26.73 -0.26 -3.91 15 17 C -0.20 -4.25 7.60 -26.74 -0.20 -4.46 15 18 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 19 H 0.07 1.57 6.41 -51.93 -0.33 1.24 15 20 H 0.07 1.26 7.94 -51.93 -0.41 0.85 15 21 H 0.14 2.37 8.06 -52.49 -0.42 1.95 15 22 H 0.14 2.00 8.06 -52.49 -0.42 1.58 15 23 H 0.19 2.72 8.06 -52.49 -0.42 2.30 15 24 H 0.07 1.26 8.08 -51.93 -0.42 0.84 15 25 H 0.09 1.80 8.14 -51.93 -0.42 1.37 15 26 H 0.09 1.98 7.14 -51.92 -0.37 1.61 15 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 LS Contribution 233.12 15.07 3.51 3.51 Total: -1.00 -31.10 233.12 -5.10 -36.20 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.30 Total: 2.80 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -1.89 Total: -29.67 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.88 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: 0.06 Total: -3.60 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.26 Total: 17.65 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.10 -5.10 -36.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799024.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.999 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds