Wall clock time and date at job start Mon Mar 30 2020 02:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99539 * 2 1 4 4 H 1.48500 * 109.46870 * 90.00685 * 3 2 1 5 5 H 1.48511 * 109.46821 * 210.00157 * 3 2 1 6 6 H 1.48499 * 109.47561 * 329.99965 * 3 2 1 7 7 C 1.37878 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 5.15499 * 7 2 1 9 9 C 1.50695 * 119.99719 * 185.15887 * 7 2 1 10 10 H 1.09000 * 109.46483 * 305.34879 * 9 7 2 11 11 C 1.53132 * 109.45731 * 185.38127 * 9 7 2 12 12 C 1.53401 * 109.41663 * 169.98595 * 11 9 7 13 13 C 1.50636 * 108.38603 * 49.55254 * 12 11 9 14 14 C 1.40654 * 128.28020 * 163.65120 * 13 12 11 15 15 C 1.34766 * 106.63893 * 180.02562 * 14 13 12 16 16 O 1.34524 * 108.48763 * 0.02562 * 15 14 13 17 17 C 1.33834 * 109.41368 * 359.95400 * 16 15 14 18 18 C 1.50918 * 127.80258 * 180.16608 * 17 16 15 19 19 H 0.97002 * 120.00230 * 174.99836 * 1 2 3 20 20 H 1.09001 * 109.47863 * 289.96556 * 11 9 7 21 21 H 1.08999 * 109.47896 * 49.99492 * 11 9 7 22 22 H 1.09001 * 109.68109 * 169.27541 * 12 11 9 23 23 H 1.08998 * 109.68302 * 289.79066 * 12 11 9 24 24 H 1.08002 * 126.68220 * 0.03740 * 14 13 12 25 25 H 1.08000 * 125.75589 * 180.02562 * 15 14 13 26 26 H 1.09001 * 109.66683 * 43.42079 * 18 17 16 27 27 H 1.09001 * 109.68505 * 282.88802 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4464 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4678 -2.1274 -0.0850 9 6 3.5069 -1.1966 0.1168 10 1 3.9332 -0.5652 -0.6627 11 6 4.0286 -2.6273 -0.0436 12 6 5.5568 -2.6011 -0.1750 13 6 6.1151 -1.7555 0.9396 14 6 7.4396 -1.6967 1.4092 15 6 7.4529 -0.8001 2.4152 16 8 6.2069 -0.3187 2.5741 17 6 5.3910 -0.8932 1.6822 18 6 3.9128 -0.6548 1.4929 19 1 -0.4850 -0.8368 -0.0732 20 1 3.7490 -3.2163 0.8300 21 1 3.5944 -3.0745 -0.9378 22 1 5.9493 -3.6152 -0.0983 23 1 5.8352 -2.1716 -1.1373 24 1 8.2820 -2.2602 1.0361 25 1 8.3181 -0.5160 2.9959 26 1 3.7043 0.4139 1.5417 27 1 3.3544 -1.1740 2.2718 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259800694.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:27 Heat of formation + Delta-G solvation = -23.969295 kcal Electronic energy + Delta-G solvation = -11908.736412 eV Core-core repulsion = 9824.563404 eV Total energy + Delta-G solvation = -2084.173009 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.55057 -38.40253 -35.01635 -33.55649 -31.07287 -30.27061 -26.23936 -24.44312 -22.39371 -21.92285 -19.73528 -19.67452 -17.90824 -17.06571 -16.01588 -15.73519 -15.32938 -14.92010 -14.34793 -14.03967 -13.64800 -13.52915 -13.09952 -13.00439 -12.56449 -12.07303 -11.81136 -11.44565 -11.34851 -10.86414 -10.63625 -10.44569 -9.12224 -8.74779 -6.43747 0.86866 1.40032 1.48351 1.65639 1.74863 2.15143 2.42162 3.06805 3.92120 3.99177 4.05899 4.12082 4.47184 4.53862 4.62840 4.67177 4.72286 4.92400 5.06069 5.09268 5.27663 5.31025 5.44729 5.61149 5.72890 6.00233 6.01773 6.33805 6.54398 7.35661 8.63207 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.049308 B = 0.013515 C = 0.011519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.717994 B = 2071.341408 C = 2430.122231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.021 4.021 3 Si 1.083 2.917 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.286 1.286 7 C -0.590 4.590 8 H 0.027 0.973 9 C 0.020 3.980 10 H 0.030 0.970 11 C -0.100 4.100 12 C -0.045 4.045 13 C -0.193 4.193 14 C -0.212 4.212 15 C -0.052 4.052 16 O -0.194 6.194 17 C -0.040 4.040 18 C -0.037 4.037 19 H 0.254 0.746 20 H 0.046 0.954 21 H 0.059 0.941 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.176 0.824 25 H 0.244 0.756 26 H 0.058 0.942 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.096 -1.836 2.573 16.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.218 4.218 3 Si 0.906 3.094 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.212 1.212 7 C -0.628 4.628 8 H 0.045 0.955 9 C 0.001 3.999 10 H 0.049 0.951 11 C -0.137 4.137 12 C -0.082 4.082 13 C -0.194 4.194 14 C -0.230 4.230 15 C -0.118 4.118 16 O -0.091 6.091 17 C -0.089 4.089 18 C -0.075 4.075 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.095 0.905 24 H 0.193 0.807 25 H 0.260 0.740 26 H 0.076 0.924 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.798 -0.014 2.840 16.051 hybrid contribution -0.513 -1.949 -0.070 2.016 sum 15.285 -1.962 2.770 15.657 Atomic orbital electron populations 1.70921 1.08020 1.29947 1.49164 1.27108 0.96314 1.06048 0.92367 0.83514 0.75160 0.72264 0.78485 1.19155 1.17966 1.21219 1.22292 0.92716 0.93800 1.54021 0.95479 1.19121 0.94392 0.95052 0.91319 0.95147 1.21496 0.94729 0.96743 1.00774 1.20122 0.94021 0.98765 0.95266 1.20557 0.94553 1.02304 1.01989 1.21828 0.97160 1.03818 1.00215 1.24957 0.85785 0.99005 1.02026 1.83898 1.19516 1.56210 1.49486 1.22817 0.94068 0.98723 0.93338 1.20684 0.84995 1.00855 1.00929 0.93652 0.93559 0.92261 0.89164 0.90478 0.80679 0.73968 0.92392 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.69 21.45 0.29 -59.37 15 2 C -0.02 -1.20 5.43 84.66 0.46 -0.74 15 3 Si 1.08 51.55 25.27 68.60 1.73 53.28 15 4 H -0.27 -11.88 6.85 99.48 0.68 -11.20 15 5 H -0.26 -11.16 6.36 99.48 0.63 -10.53 15 6 H -0.29 -13.45 7.11 99.48 0.71 -12.74 15 7 C -0.59 -33.69 8.88 25.60 0.23 -33.46 15 8 H 0.03 1.67 7.98 -2.91 -0.02 1.65 15 9 C 0.02 0.96 1.64 -11.38 -0.02 0.95 15 10 H 0.03 1.47 6.62 -2.39 -0.02 1.45 15 11 C -0.10 -4.03 5.16 30.77 0.16 -3.87 15 12 C -0.04 -1.46 6.29 29.96 0.19 -1.28 15 13 C -0.19 -6.70 5.95 -20.06 -0.12 -6.82 15 14 C -0.21 -5.71 10.90 22.06 0.24 -5.47 15 15 C -0.05 -1.32 12.10 67.02 0.81 -0.51 15 16 O -0.19 -6.86 10.65 -0.21 0.00 -6.86 15 17 C -0.04 -1.56 7.22 24.98 0.18 -1.38 15 18 C -0.04 -1.67 5.11 30.04 0.15 -1.52 15 19 H 0.25 16.20 8.72 -92.71 -0.81 15.39 15 20 H 0.05 1.89 8.12 -2.39 -0.02 1.87 15 21 H 0.06 2.37 8.11 -2.39 -0.02 2.35 15 22 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.18 3.45 8.06 -2.91 -0.02 3.42 15 25 H 0.24 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.06 2.63 4.56 -2.39 -0.01 2.62 15 27 H 0.07 3.20 8.12 -2.39 -0.02 3.18 15 Total: -1.00 -66.65 223.23 5.33 -61.33 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.02 Total: 5.72 kcal Atomic # 6 Polarization: -56.39 SS G_CDS: 2.28 Total: -54.11 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.29 Total: -59.37 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.00 Total: -6.86 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.73 Total: 53.28 kcal Total: -66.65 5.33 -61.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800694.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.360 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds