Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33876 * 126.05129 * 2 1 4 4 C 1.34249 * 111.05624 * 180.26138 * 3 2 1 5 5 C 1.33999 * 109.70649 * 359.74270 * 4 3 2 6 6 C 1.50702 * 126.95726 * 180.02562 * 5 4 3 7 7 C 1.53005 * 117.49593 * 8.61698 * 6 5 4 8 8 C 1.53004 * 60.00054 * 252.51203 * 7 6 5 9 9 C 1.38975 * 126.05501 * 179.81760 * 2 1 3 10 10 C 1.41377 * 127.37309 * 0.02935 * 9 2 1 11 11 H 1.08001 * 120.00371 * 328.59349 * 10 9 2 12 12 C 1.39702 * 119.99873 * 148.59788 * 10 9 2 13 13 N 1.31019 * 120.00113 * 334.59357 * 12 10 9 14 14 Si 1.86799 * 119.99742 * 154.59920 * 12 10 9 15 15 H 1.48497 * 109.47057 * 180.02562 * 14 12 10 16 16 H 1.48491 * 109.47485 * 59.99672 * 14 12 10 17 17 H 1.48504 * 109.47197 * 299.99301 * 14 12 10 18 18 H 1.09001 * 109.47198 * 264.92876 * 1 2 3 19 19 H 1.08996 * 109.47343 * 24.92943 * 1 2 3 20 20 H 1.09000 * 109.47124 * 144.93169 * 1 2 3 21 21 H 1.08003 * 125.14464 * 179.77685 * 4 3 2 22 22 H 1.08996 * 115.55267 * 154.32935 * 6 5 4 23 23 H 1.08990 * 117.49741 * 0.02562 * 7 6 5 24 24 H 1.09006 * 117.49393 * 145.02763 * 7 6 5 25 25 H 1.08997 * 117.50433 * 252.50912 * 8 7 6 26 26 H 1.09005 * 117.51376 * 107.48103 * 8 7 6 27 27 H 0.97001 * 119.99993 * 354.29193 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2949 1.0824 0.0000 4 6 3.5916 0.7350 -0.0057 5 6 3.7017 -0.6004 -0.0040 6 6 4.9763 -1.4045 -0.0084 7 6 6.2906 -0.6461 0.1880 8 6 5.9306 -1.2094 -1.1883 9 6 2.3250 -1.1235 0.0036 10 6 1.9217 -2.4786 0.0073 11 1 1.0024 -2.7671 0.4951 12 6 2.7125 -3.4444 -0.6200 13 7 3.5129 -3.1009 -1.5987 14 14 2.6286 -5.2255 -0.0633 15 1 3.5583 -6.0444 -0.8821 16 1 1.2429 -5.7320 -0.2314 17 1 3.0187 -5.3161 1.3667 18 1 -0.3634 -0.0908 1.0236 19 1 -0.3634 0.9319 -0.4331 20 1 -0.3633 -0.8411 -0.5904 21 1 4.4207 1.4273 -0.0104 22 1 4.9029 -2.4042 0.4196 23 1 6.2333 0.4341 0.3207 24 1 7.0822 -1.1470 0.7454 25 1 6.4853 -2.0807 -1.5364 26 1 5.6363 -0.4997 -1.9616 27 1 3.4965 -2.1943 -1.9433 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259800752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = 15.315600 kcal Electronic energy + Delta-G solvation = -11943.686251 eV Core-core repulsion = 9861.216763 eV Total energy + Delta-G solvation = -2082.469488 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.56711 -36.51392 -33.80368 -30.75801 -29.96741 -26.25387 -24.07171 -22.37472 -21.66509 -19.79142 -17.62729 -17.30549 -15.36938 -14.62032 -14.41744 -13.94376 -13.37773 -12.89952 -12.61578 -11.90638 -11.86555 -11.41120 -11.05953 -10.89553 -10.53771 -10.39274 -10.28123 -9.99916 -9.66152 -9.30523 -8.71557 -7.63227 -7.08033 -6.78193 -4.12643 3.08461 3.24613 3.29097 3.47228 3.95354 4.22479 4.51474 4.80752 5.29028 5.50358 5.70787 5.95601 6.03459 6.20147 6.28327 6.37311 6.53318 6.57507 6.62711 6.76252 6.89965 7.22923 7.30266 7.69255 7.78462 8.17780 8.28133 8.69413 9.04290 9.20270 10.42455 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.027622 B = 0.019739 C = 0.012443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.430524 B = 1418.182799 C = 2249.648431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.216 4.216 3 O -0.200 6.200 4 C -0.062 4.062 5 C -0.185 4.185 6 C -0.038 4.038 7 C -0.203 4.203 8 C -0.161 4.161 9 C 0.040 3.960 10 C -0.534 4.534 11 H 0.067 0.933 12 C 0.042 3.958 13 N -0.810 5.810 14 Si 1.058 2.942 15 H -0.278 1.278 16 H -0.281 1.281 17 H -0.280 1.280 18 H 0.043 0.957 19 H 0.043 0.957 20 H 0.067 0.933 21 H 0.170 0.830 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 1.470 1.539 2.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.264 4.264 3 O -0.100 6.100 4 C -0.129 4.129 5 C -0.187 4.187 6 C -0.056 4.056 7 C -0.240 4.240 8 C -0.198 4.198 9 C 0.037 3.963 10 C -0.565 4.565 11 H 0.086 0.914 12 C -0.178 4.178 13 N -0.436 5.436 14 Si 0.883 3.117 15 H -0.203 1.203 16 H -0.206 1.206 17 H -0.206 1.206 18 H 0.061 0.939 19 H 0.062 0.938 20 H 0.085 0.915 21 H 0.187 0.813 22 H 0.124 0.876 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.593 0.253 1.244 2.887 hybrid contribution -0.441 1.438 0.286 1.531 sum 2.152 1.691 1.530 3.135 Atomic orbital electron populations 1.19519 0.87461 1.00625 1.00115 1.22260 0.92057 0.83548 1.28509 1.83387 1.15473 1.35886 1.75286 1.22824 0.84300 0.95415 1.10406 1.20689 0.94329 0.92538 1.11168 1.20042 0.86115 0.98360 1.01102 1.23026 1.00200 0.99481 1.01252 1.22768 1.03804 1.02245 0.90998 1.18877 0.88291 0.93247 0.95876 1.19465 1.09720 0.90934 1.36365 0.91445 1.26554 0.92165 1.05957 0.93079 1.70483 1.32284 1.23675 1.17122 0.83743 0.77066 0.74070 0.76773 1.20276 1.20635 1.20575 0.93877 0.93768 0.91474 0.81258 0.87639 0.89873 0.89648 0.89261 0.89844 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.44 10.22 36.01 0.37 -0.07 15 2 C -0.22 -5.62 7.49 -34.04 -0.25 -5.88 15 3 O -0.20 -5.02 10.52 6.99 0.07 -4.94 15 4 C -0.06 -1.44 11.37 29.24 0.33 -1.11 15 5 C -0.18 -4.65 5.18 -102.44 -0.53 -5.18 15 6 C -0.04 -0.86 4.01 -91.77 -0.37 -1.23 15 7 C -0.20 -3.70 10.03 -26.73 -0.27 -3.97 15 8 C -0.16 -3.20 9.52 -26.73 -0.25 -3.46 15 9 C 0.04 1.10 5.38 -104.75 -0.56 0.54 15 10 C -0.53 -14.84 9.03 -37.84 -0.34 -15.18 15 11 H 0.07 1.85 7.96 -52.49 -0.42 1.44 15 12 C 0.04 1.10 4.27 -17.35 -0.07 1.02 15 13 N -0.81 -21.87 11.48 55.54 0.64 -21.23 15 14 Si 1.06 22.73 30.00 -169.99 -5.10 17.63 15 15 H -0.28 -5.91 7.11 56.52 0.40 -5.50 15 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 17 H -0.28 -5.85 7.11 56.52 0.40 -5.44 15 18 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 19 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.07 1.43 8.10 -51.93 -0.42 1.01 15 21 H 0.17 3.24 7.13 -52.48 -0.37 2.87 15 22 H 0.11 2.60 7.23 -51.93 -0.38 2.23 15 23 H 0.08 1.41 6.99 -51.93 -0.36 1.05 15 24 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.09 1.72 8.14 -51.93 -0.42 1.29 15 26 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 27 H 0.29 8.22 6.44 -40.82 -0.26 7.96 15 LS Contribution 234.39 15.07 3.53 3.53 Total: -1.00 -29.03 234.39 -5.93 -34.96 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.12 Total: 4.57 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: -1.95 Total: -34.52 kcal Atomic # 7 Polarization: -21.87 SS G_CDS: 0.64 Total: -21.23 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.10 Total: 17.63 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.03 -5.93 -34.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.276 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds