Wall clock time and date at job start Mon Mar 30 2020 02:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00199 * 2 1 4 4 H 1.48502 * 109.47043 * 264.78415 * 3 2 1 5 5 H 1.48502 * 109.47080 * 24.78360 * 3 2 1 6 6 H 1.48493 * 109.47078 * 144.78486 * 3 2 1 7 7 C 1.37885 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00271 * 5.40957 * 7 2 1 9 9 C 1.50698 * 119.99363 * 185.40853 * 7 2 1 10 10 H 1.08994 * 109.60351 * 335.50981 * 9 7 2 11 11 C 1.53283 * 109.59994 * 95.99914 * 9 7 2 12 12 C 1.53123 * 109.70595 * 170.52873 * 11 9 7 13 13 C 1.53492 * 109.30591 * 290.07831 * 12 11 9 14 14 C 1.50716 * 108.06041 * 48.69076 * 13 12 11 15 15 C 1.33860 * 128.68265 * 164.22313 * 14 13 12 16 16 N 1.34423 * 107.79834 * 180.12860 * 15 14 13 17 17 C 1.30783 * 109.32309 * 0.02562 * 16 15 14 18 18 N 1.34405 * 108.55292 * 359.93793 * 17 16 15 19 19 H 0.97007 * 120.00096 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.42928 * 290.59228 * 11 9 7 21 21 H 1.08993 * 109.43488 * 50.49999 * 11 9 7 22 22 H 1.08999 * 109.49554 * 50.02762 * 12 11 9 23 23 H 1.08996 * 109.49519 * 170.12743 * 12 11 9 24 24 H 1.08996 * 109.74991 * 289.05236 * 13 12 11 25 25 H 1.09000 * 109.73865 * 168.33008 * 13 12 11 26 26 H 1.08001 * 126.10073 * 0.11551 * 15 14 13 27 27 H 1.08006 * 125.72645 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3958 2.6820 0.5869 6 1 3.4872 1.4744 0.8073 7 6 2.0045 -1.1942 -0.0005 8 1 1.4681 -2.1273 -0.0891 9 6 3.5064 -1.1970 0.1225 10 1 3.9038 -0.2442 -0.2269 11 6 3.9019 -1.4171 1.5870 12 6 5.4113 -1.6559 1.6838 13 6 5.7486 -3.0244 1.0762 14 6 5.0709 -3.1193 -0.2667 15 6 5.3045 -3.9826 -1.2626 16 7 4.4621 -3.6880 -2.2678 17 6 3.7167 -2.6700 -1.9235 18 7 4.0636 -2.2861 -0.6831 19 1 -0.4851 0.8401 -0.0004 20 1 3.6361 -0.5358 2.1707 21 1 3.3723 -2.2852 1.9792 22 1 5.9391 -0.8748 1.1366 23 1 5.7161 -1.6372 2.7301 24 1 5.3842 -3.8173 1.7292 25 1 6.8276 -3.1160 0.9514 26 1 6.0390 -4.7744 -1.2592 27 1 2.9504 -2.2146 -2.5334 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259813494.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:07 Heat of formation + Delta-G solvation = 43.932826 kcal Electronic energy + Delta-G solvation = -12029.574844 eV Core-core repulsion = 9980.639043 eV Total energy + Delta-G solvation = -2048.935801 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.39955 -36.11544 -33.31043 -31.81722 -29.71277 -27.48271 -25.41973 -22.24358 -21.34289 -20.32532 -18.27107 -17.30018 -16.33823 -14.79145 -14.07652 -13.72928 -13.51006 -13.26676 -13.13408 -12.76702 -12.59427 -11.74444 -11.55385 -11.10646 -10.69111 -10.45327 -10.23121 -10.10717 -9.70058 -9.17770 -8.95500 -8.42195 -7.53348 -6.43761 -4.50728 2.96048 3.05036 3.12938 3.15743 3.89818 3.96211 4.08621 4.88622 5.24980 5.28839 5.41037 5.57578 5.75527 5.99945 6.06414 6.14980 6.17781 6.25995 6.35624 6.54899 6.67229 6.82950 7.13935 7.44632 7.58267 8.04934 8.26444 8.63147 8.94017 9.13894 10.67468 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.042404 B = 0.015039 C = 0.012634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.160837 B = 1861.318782 C = 2215.786034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.085 3.915 3 Si 0.872 3.128 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.084 0.916 9 C 0.226 3.774 10 H 0.050 0.950 11 C -0.123 4.123 12 C -0.130 4.130 13 C -0.039 4.039 14 C -0.044 4.044 15 C -0.045 4.045 16 N -0.524 5.524 17 C 0.202 3.798 18 N -0.423 5.423 19 H 0.272 0.728 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -0.619 2.958 9.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.121 4.121 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.102 0.898 9 C 0.126 3.874 10 H 0.067 0.933 11 C -0.161 4.161 12 C -0.168 4.168 13 C -0.077 4.077 14 C -0.161 4.161 15 C -0.194 4.194 16 N -0.243 5.243 17 C -0.081 4.081 18 N -0.102 5.102 19 H 0.082 0.918 20 H 0.090 0.910 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.173 0.827 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.681 -0.748 2.287 9.008 hybrid contribution 0.245 1.367 0.760 1.583 sum 8.925 0.619 3.047 9.451 Atomic orbital electron populations 1.69868 1.06270 1.27822 1.47051 1.24980 0.94830 0.98961 0.93325 0.86926 0.80309 0.83516 0.79437 1.19459 1.20594 1.18784 1.20973 0.87528 0.95666 1.53241 0.89799 1.19751 0.95482 0.84633 0.87562 0.93264 1.22097 0.93506 1.02647 0.97879 1.21784 0.97927 0.96750 1.00296 1.20081 0.98763 0.97848 0.90991 1.21113 0.97815 0.98208 0.98977 1.21609 1.03619 1.02592 0.91539 1.70438 1.09216 1.15033 1.29633 1.24571 1.01476 0.95806 0.86276 1.46255 1.25367 1.24952 1.13626 0.91812 0.91034 0.91331 0.92367 0.91840 0.90891 0.90766 0.82743 0.78496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 13.96 55.43 0.77 -23.94 15 2 C 0.09 2.25 5.47 -17.82 -0.10 2.16 15 3 Si 0.87 19.49 27.01 -169.99 -4.59 14.90 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.26 -5.56 6.79 56.52 0.38 -5.18 15 7 C -0.54 -14.01 8.55 -34.44 -0.29 -14.30 15 8 H 0.08 2.47 8.06 -52.49 -0.42 2.04 15 9 C 0.23 5.09 2.69 -68.95 -0.19 4.91 15 10 H 0.05 1.12 5.25 -51.93 -0.27 0.85 15 11 C -0.12 -2.40 5.21 -26.52 -0.14 -2.54 15 12 C -0.13 -2.07 5.96 -26.41 -0.16 -2.23 15 13 C -0.04 -0.60 6.31 -27.62 -0.17 -0.77 15 14 C -0.04 -0.86 6.57 -81.72 -0.54 -1.40 15 15 C -0.04 -0.88 11.84 -17.95 -0.21 -1.10 15 16 N -0.52 -11.51 11.27 -14.87 -0.17 -11.68 15 17 C 0.20 4.48 11.98 -90.72 -1.09 3.39 15 18 N -0.42 -9.30 2.98 -108.24 -0.32 -9.62 15 19 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 20 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.07 1.39 8.09 -51.93 -0.42 0.97 15 22 H 0.06 0.94 8.12 -51.93 -0.42 0.52 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.16 2.53 8.06 -52.49 -0.42 2.11 15 27 H 0.20 4.12 8.06 -52.48 -0.42 3.70 15 LS Contribution 227.30 15.07 3.43 3.43 Total: -1.00 -28.85 227.30 -6.99 -35.84 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.23 Total: 2.96 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.88 Total: -11.89 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.28 Total: -45.24 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.59 Total: 14.90 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.85 -6.99 -35.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813494.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.772 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds