Wall clock time and date at job start Mon Mar 30 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47162 * 270.00104 * 3 2 1 5 5 H 1.48504 * 109.46867 * 29.99659 * 3 2 1 6 6 H 1.48495 * 109.47464 * 149.99872 * 3 2 1 7 7 C 1.37876 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99979 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99971 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47117 * 179.97438 * 9 7 2 11 11 N 1.30345 * 125.20241 * 304.97252 * 10 9 7 12 12 C 1.34445 * 109.87579 * 180.02562 * 11 10 9 13 13 N 1.36895 * 145.85002 * 179.97438 * 12 11 10 14 14 H 0.97003 * 126.03439 * 359.74424 * 13 12 11 15 15 N 1.40069 * 107.93267 * 180.02562 * 13 12 11 16 16 C 1.30638 * 109.10238 * 0.02562 * 15 13 12 17 17 C 1.38969 * 107.38756 * 0.02562 * 12 11 10 18 18 N 1.35861 * 125.20019 * 124.99808 * 10 9 7 19 19 H 0.97001 * 126.47222 * 359.96299 * 18 10 9 20 20 H 0.97000 * 119.99503 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46833 * 60.00035 * 9 7 2 22 22 H 1.08998 * 109.46662 * 300.00184 * 9 7 2 23 23 H 1.08003 * 125.64641 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0138 -2.6151 0.0023 11 7 3.6883 -3.5264 0.8755 12 6 4.3130 -4.6810 0.5856 13 7 4.5065 -5.9866 0.9489 14 1 4.1041 -6.4327 1.7105 15 7 5.3933 -6.5629 0.0305 16 6 5.7339 -5.6656 -0.8557 17 6 5.0814 -4.4633 -0.5517 18 7 4.8755 -3.1418 -0.9065 19 1 5.2716 -2.6789 -1.6612 20 1 -0.4849 0.8401 0.0004 21 1 3.8745 -0.6802 0.8911 22 1 3.8751 -0.6805 -0.8888 23 1 6.4071 -5.8241 -1.6853 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817695.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:43 Heat of formation + Delta-G solvation = 128.567942 kcal Electronic energy + Delta-G solvation = -11172.351223 eV Core-core repulsion = 9023.545133 eV Total energy + Delta-G solvation = -2148.806090 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.071 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.10672 -38.47130 -33.22111 -32.38467 -30.53814 -30.20312 -27.10984 -23.32417 -21.47266 -20.88205 -19.81353 -18.05542 -16.91146 -15.90249 -15.26672 -14.52868 -14.25867 -13.38017 -13.02785 -12.80272 -12.23507 -11.94582 -11.11008 -10.75779 -10.55869 -10.46525 -10.09625 -9.48598 -9.33743 -8.67096 -8.22288 -7.63942 -6.13315 -4.14202 1.80422 2.64848 3.04853 3.21860 3.30244 3.31243 3.53248 3.66883 4.32875 4.78059 4.93208 5.17707 5.39059 5.69212 6.10976 6.38804 6.59446 6.82140 6.88206 7.36818 7.56092 7.83403 7.98880 8.40015 8.60721 8.95835 9.42654 10.99471 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.083276 B = 0.009025 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.149151 B = 3101.773553 C = 3287.569996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.057 3.943 10 C 0.355 3.645 11 N -0.491 5.491 12 C 0.226 3.774 13 N -0.472 5.472 14 H 0.440 0.560 15 N -0.265 5.265 16 C 0.091 3.909 17 C -0.134 4.134 18 N -0.572 5.572 19 H 0.419 0.581 20 H 0.266 0.734 21 H 0.056 0.944 22 H 0.037 0.963 23 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.050 -5.066 -2.212 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.018 3.982 10 C 0.088 3.912 11 N -0.218 5.218 12 C -0.014 4.014 13 N -0.192 5.192 14 H 0.285 0.715 15 N -0.085 5.085 16 C -0.102 4.102 17 C -0.250 4.250 18 N -0.184 5.184 19 H 0.257 0.743 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.511 -6.118 -1.150 12.217 hybrid contribution 0.686 1.556 -0.938 1.942 sum 11.198 -4.562 -2.088 12.270 Atomic orbital electron populations 1.69882 1.06211 1.27098 1.49899 1.24935 0.94812 0.98821 0.94463 0.86860 0.80474 0.83865 0.78607 1.20086 1.20925 1.18846 1.20772 0.87100 0.95383 1.51813 0.89948 1.18491 0.98676 0.82376 0.98684 1.24372 0.86320 0.97354 0.83177 1.69693 1.26848 0.96322 1.28895 1.19252 0.98704 0.88616 0.94819 1.44919 1.41944 1.05147 1.27224 0.71498 1.77039 1.08852 1.20621 1.01971 1.22572 1.00693 0.87284 0.99622 1.19258 1.12513 0.88973 1.04304 1.42569 1.40538 1.08050 1.27215 0.74323 0.92385 0.92613 0.94536 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.88 14 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 14 3 Si 0.88 19.97 27.47 -169.99 -4.67 15.30 14 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 14 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 6 H -0.26 -5.65 6.54 56.52 0.37 -5.28 14 7 C -0.51 -14.07 9.60 -34.44 -0.33 -14.40 14 8 H 0.08 2.56 7.98 -52.48 -0.42 2.14 14 9 C 0.06 1.27 4.67 -29.03 -0.14 1.13 14 10 C 0.36 7.53 7.34 -154.79 -1.14 6.40 14 11 N -0.49 -11.18 11.15 -9.59 -0.11 -11.29 14 12 C 0.23 4.52 9.21 -155.32 -1.43 3.09 14 13 N -0.47 -7.89 7.44 31.04 0.23 -7.66 14 14 H 0.44 6.04 8.96 -182.62 -1.64 4.40 14 15 N -0.26 -4.19 12.63 30.65 0.39 -3.80 14 16 C 0.09 1.33 12.00 -17.35 -0.21 1.12 14 17 C -0.13 -2.37 8.14 -83.93 -0.68 -3.05 14 18 N -0.57 -9.84 6.25 -7.98 -0.05 -9.89 14 19 H 0.42 5.49 8.96 -40.82 -0.37 5.13 14 20 H 0.27 7.39 8.31 -40.82 -0.34 7.05 14 21 H 0.06 1.23 7.20 -51.93 -0.37 0.86 14 22 H 0.04 0.73 7.57 -51.93 -0.39 0.33 14 23 H 0.18 1.83 8.06 -52.48 -0.42 1.41 14 LS Contribution 213.14 15.07 3.21 3.21 Total: -1.00 -32.57 213.14 -7.02 -39.59 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -2.78 Total: 4.23 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.02 Total: -3.80 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 1.23 Total: -58.52 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -32.57 -7.02 -39.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817695.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.159 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds