Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99939 * 2 1 4 4 H 1.48495 * 109.47013 * 240.00073 * 3 2 1 5 5 H 1.48497 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47161 * 120.00043 * 3 2 1 7 7 C 1.37876 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00558 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.46902 * 180.02562 * 9 7 2 11 11 C 1.34676 * 126.54851 * 85.04597 * 10 9 7 12 12 N 1.34165 * 108.31001 * 179.97438 * 11 10 9 13 13 C 1.31481 * 109.33398 * 359.97438 * 12 11 10 14 14 O 1.35053 * 144.36739 * 180.02562 * 13 12 11 15 15 C 1.35237 * 108.73057 * 179.74434 * 14 13 12 16 16 C 1.32675 * 108.81395 * 0.37435 * 15 14 13 17 17 N 1.36083 * 108.20556 * 359.97438 * 13 12 11 18 18 H 0.97005 * 120.00083 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.47226 * 60.00438 * 9 7 2 20 20 H 1.09000 * 109.47396 * 300.00387 * 9 7 2 21 21 H 1.08000 * 125.84180 * 359.96828 * 11 10 9 22 22 H 1.08001 * 125.59558 * 180.22836 * 15 14 13 23 23 H 1.08002 * 126.14690 * 179.90031 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 6 2.8226 -4.1933 1.0773 12 7 3.6226 -5.1857 0.6591 13 6 3.5520 -5.2792 -0.6505 14 8 4.0049 -5.9546 -1.7288 15 6 3.4289 -5.4382 -2.8381 16 6 2.6269 -4.4437 -2.4803 17 7 2.6874 -4.3287 -1.0986 18 1 -0.4850 0.8401 -0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 2.6782 -3.8869 2.1028 22 1 3.5963 -5.7779 -3.8495 23 1 2.0302 -3.8361 -3.1445 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817696.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = 65.428433 kcal Electronic energy + Delta-G solvation = -11353.994395 eV Core-core repulsion = 9170.157619 eV Total energy + Delta-G solvation = -2183.836776 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.88836 -40.86984 -35.56634 -35.19261 -32.45036 -30.46977 -28.42837 -25.15983 -23.92682 -22.92404 -21.72793 -18.68807 -18.04746 -17.76519 -17.12818 -16.62078 -16.35482 -14.93177 -14.80137 -14.34227 -14.04565 -13.89563 -13.58383 -12.74464 -12.66885 -12.56745 -12.02753 -11.64805 -11.14383 -10.63683 -9.67997 -9.06205 -8.23224 -6.38833 0.47242 1.02920 1.28886 1.40370 1.41969 1.50637 1.79422 1.95812 2.39606 3.06632 3.51929 3.73483 4.10674 4.31200 4.53099 4.79167 4.90718 5.02977 5.22205 5.55583 5.65890 5.74537 6.06966 6.30184 6.69808 6.80155 7.30444 8.83745 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.055654 B = 0.010200 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.987910 B = 2744.482834 C = 2875.589482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.102 3.898 10 C 0.005 3.995 11 C -0.006 4.006 12 N -0.491 5.491 13 C 0.295 3.705 14 O -0.181 6.181 15 C 0.017 3.983 16 C -0.067 4.067 17 N -0.439 5.439 18 H 0.268 0.732 19 H 0.006 0.994 20 H 0.033 0.967 21 H 0.201 0.799 22 H 0.294 0.706 23 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 -7.050 -7.002 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.063 3.937 10 C -0.106 4.106 11 C -0.151 4.151 12 N -0.227 5.227 13 C 0.002 3.998 14 O -0.076 6.076 15 C -0.048 4.048 16 C -0.182 4.182 17 N -0.126 5.126 18 H 0.077 0.923 19 H 0.024 0.976 20 H 0.051 0.949 21 H 0.218 0.782 22 H 0.309 0.691 23 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.950 -7.536 -6.626 11.189 hybrid contribution -0.429 1.505 -0.428 1.623 sum 4.521 -6.031 -7.054 10.323 Atomic orbital electron populations 1.70034 1.07448 1.28308 1.50487 1.25811 0.95728 1.02760 0.94209 0.85506 0.78328 0.78220 0.79040 1.19653 1.20251 1.19360 1.21246 0.92834 0.91078 1.52120 0.93327 1.17497 0.91073 0.87917 0.97165 1.21515 1.05539 0.99837 0.83705 1.22420 0.97899 0.94946 0.99792 1.70192 1.26918 1.23820 1.01721 1.22514 0.96250 0.91360 0.89648 1.84613 1.59690 1.51527 1.11749 1.25220 0.94097 0.93906 0.91597 1.22930 1.08585 1.05192 0.81453 1.44548 1.33762 1.26855 1.07468 0.92260 0.97552 0.94907 0.78179 0.69066 0.77369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 13.29 21.45 0.28 -53.08 14 2 C 0.01 0.79 5.46 84.66 0.46 1.25 14 3 Si 0.96 43.15 29.54 68.60 2.03 45.18 14 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 14 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 14 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 14 7 C -0.53 -29.91 9.09 25.60 0.23 -29.68 14 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 14 9 C 0.10 5.32 5.53 29.10 0.16 5.48 14 10 C 0.01 0.25 6.44 40.90 0.26 0.51 14 11 C -0.01 -0.28 11.77 83.52 0.98 0.70 14 12 N -0.49 -21.50 11.29 -313.91 -3.54 -25.05 14 13 C 0.30 11.98 9.78 179.64 1.76 13.74 14 14 O -0.18 -5.69 10.77 -19.49 -0.21 -5.90 14 15 C 0.02 0.36 12.01 66.65 0.80 1.16 14 16 C -0.07 -1.98 11.95 82.42 0.99 -0.99 14 17 N -0.44 -18.04 3.57 -456.71 -1.63 -19.66 14 18 H 0.27 14.56 8.31 -92.70 -0.77 13.79 14 19 H 0.01 0.34 8.14 -2.39 -0.02 0.32 14 20 H 0.03 1.78 8.14 -2.39 -0.02 1.76 14 21 H 0.20 7.74 8.06 -2.91 -0.02 7.72 14 22 H 0.29 1.82 8.06 -2.91 -0.02 1.79 14 23 H 0.21 5.10 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -70.33 218.31 3.79 -66.54 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: 1.22 Total: -0.19 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.65 Total: -7.83 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -4.89 Total: -97.79 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.21 Total: -5.90 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.33 3.79 -66.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817696.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.964 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds