Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47111 * 2 1 4 4 O 1.33681 * 126.58221 * 269.99683 * 3 2 1 5 5 N 1.20655 * 113.57752 * 180.02562 * 4 3 2 6 6 C 1.32060 * 111.81212 * 0.02562 * 5 4 3 7 7 C 1.41449 * 127.54907 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99838 * 174.33253 * 7 6 5 9 9 C 1.40083 * 120.00007 * 354.32967 * 7 6 5 10 10 N 1.30712 * 119.99972 * 5.96972 * 9 7 6 11 11 Si 1.86796 * 120.00300 * 185.97571 * 9 7 6 12 12 H 1.48496 * 109.47626 * 94.97822 * 11 9 7 13 13 H 1.48497 * 109.47258 * 214.98251 * 11 9 7 14 14 H 1.48499 * 109.46878 * 334.97765 * 11 9 7 15 15 C 1.36950 * 126.58587 * 90.00134 * 3 2 1 16 16 C 1.43200 * 128.56398 * 0.25896 * 15 3 2 17 17 N 3.94996 * 98.20235 * 66.37405 * 2 1 3 18 18 H 1.08996 * 109.46947 * 300.00247 * 1 2 3 19 19 H 1.09000 * 109.46913 * 59.99704 * 1 2 3 20 20 H 1.09001 * 109.47369 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46947 * 239.99753 * 2 1 3 22 22 H 1.09000 * 109.46913 * 120.00296 * 2 1 3 23 23 H 0.97000 * 119.99629 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2980 2.1719 -1.0735 5 7 2.6903 3.2801 -0.8020 6 6 2.7586 3.4705 0.5031 7 6 3.1722 4.6397 1.1833 8 1 3.0945 4.6946 2.2590 9 6 3.6827 5.7263 0.4615 10 7 3.6690 5.7072 -0.8454 11 14 4.3833 7.2025 1.3666 12 1 5.8549 7.0516 1.4956 13 1 4.0775 8.4405 0.6057 14 1 3.7742 7.2891 2.7182 15 6 2.3045 2.1904 1.0997 16 6 2.1870 1.8426 2.4838 17 7 2.0936 1.5668 3.5819 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 4.0222 6.4598 -1.3452 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259824894.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = 43.887780 kcal Electronic energy + Delta-G solvation = -11241.001029 eV Core-core repulsion = 9056.230180 eV Total energy + Delta-G solvation = -2184.770849 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.74870 -37.64249 -36.03867 -35.34205 -33.38370 -30.67519 -28.47227 -25.29904 -24.27847 -22.06247 -19.38194 -18.49213 -17.81588 -17.15166 -16.34129 -15.52952 -14.92150 -14.62552 -14.44267 -13.98458 -13.72198 -13.50132 -13.10838 -13.04907 -12.84100 -12.32188 -12.04157 -11.85045 -11.61605 -11.03126 -10.33819 -9.82129 -8.66090 -6.73024 0.46681 1.27756 1.37595 1.52540 1.66932 1.82762 2.18790 2.48368 2.58973 3.21370 3.34815 3.89588 4.37123 4.41381 4.45075 4.62332 4.79266 5.03755 5.16979 5.17736 5.28410 5.41913 6.13343 6.39602 6.60815 6.74187 8.31284 8.46661 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.048536 B = 0.011934 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.749839 B = 2345.742862 C = 2833.565398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C 0.037 3.963 4 O 0.061 5.939 5 N -0.446 5.446 6 C 0.176 3.824 7 C -0.470 4.470 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.797 5.797 11 Si 0.993 3.007 12 H -0.261 1.261 13 H -0.262 1.262 14 H -0.258 1.258 15 C -0.255 4.255 16 C 0.332 3.668 17 N -0.479 5.479 18 H 0.040 0.960 19 H 0.060 0.940 20 H 0.098 0.902 21 H 0.116 0.884 22 H 0.096 0.904 23 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -5.885 -0.709 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.035 4.035 4 O 0.019 5.981 5 N -0.175 5.175 6 C 0.030 3.970 7 C -0.508 4.508 8 H 0.103 0.897 9 C -0.190 4.190 10 N -0.424 5.424 11 Si 0.813 3.187 12 H -0.185 1.185 13 H -0.187 1.187 14 H -0.182 1.182 15 C -0.264 4.264 16 C 0.020 3.980 17 N -0.159 5.159 18 H 0.060 0.940 19 H 0.079 0.921 20 H 0.117 0.883 21 H 0.135 0.865 22 H 0.114 0.886 23 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.392 -5.566 -0.363 6.069 hybrid contribution 0.350 0.783 0.656 1.080 sum -2.042 -4.782 0.293 5.208 Atomic orbital electron populations 1.21751 0.92464 1.03922 1.01976 1.20370 0.97411 0.84274 1.05865 1.25057 0.96022 0.96661 0.85740 1.84486 1.61927 1.18932 1.32803 1.74763 1.30746 0.96523 1.15468 1.21777 0.94544 0.92873 0.87804 1.19045 1.39713 0.97183 0.94817 0.89676 1.26864 0.94154 1.02417 0.95597 1.69909 1.32585 1.31610 1.08255 0.85016 0.79026 0.75795 0.78866 1.18524 1.18667 1.18216 1.17638 1.23825 0.97964 0.86948 1.24112 0.91157 0.91687 0.91038 1.81098 1.13630 1.10328 1.10843 0.94049 0.92087 0.88337 0.86527 0.88562 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.90 71.98 0.71 -2.51 14 2 C -0.04 -1.06 6.35 29.85 0.19 -0.87 14 3 C 0.04 1.45 6.77 25.38 0.17 1.62 14 4 O 0.06 2.84 11.04 75.29 0.83 3.67 14 5 N -0.45 -24.53 10.47 -48.12 -0.50 -25.03 14 6 C 0.18 9.67 7.02 42.59 0.30 9.97 14 7 C -0.47 -25.99 9.43 23.51 0.22 -25.77 14 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 14 9 C 0.03 1.49 5.49 85.31 0.47 1.95 14 10 N -0.80 -43.49 12.07 21.85 0.26 -43.22 14 11 Si 0.99 39.00 29.56 68.60 2.03 41.03 14 12 H -0.26 -9.84 7.11 99.48 0.71 -9.13 14 13 H -0.26 -9.68 7.11 99.48 0.71 -8.97 14 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 14 15 C -0.25 -11.76 6.33 -19.64 -0.12 -11.89 14 16 C 0.33 14.63 15.64 88.33 1.38 16.01 14 17 N -0.48 -20.98 18.54 19.00 0.35 -20.62 14 18 H 0.04 1.06 8.14 -2.39 -0.02 1.04 14 19 H 0.06 1.40 8.14 -2.39 -0.02 1.38 14 20 H 0.10 1.54 8.14 -2.39 -0.02 1.52 14 21 H 0.12 2.34 8.14 -2.39 -0.02 2.32 14 22 H 0.10 2.29 8.05 -2.39 -0.02 2.27 14 23 H 0.29 14.15 8.29 -92.71 -0.77 13.38 14 Total: -1.00 -64.06 226.70 7.52 -56.54 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.23 Total: -0.89 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 3.32 Total: -11.47 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: 0.11 Total: -88.88 kcal Atomic # 8 Polarization: 2.84 SS G_CDS: 0.83 Total: 3.67 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -64.06 7.52 -56.54 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259824894.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.425 kcal (2) G-P(sol) polarization free energy of solvation -64.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds