Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48492 * 109.47198 * 240.00349 * 3 2 1 5 5 H 1.48504 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47140 * 119.99996 * 3 2 1 7 7 C 1.37876 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46856 * 180.02562 * 9 7 2 11 11 N 1.34886 * 126.11359 * 264.95505 * 10 9 7 12 12 H 0.97007 * 126.02956 * 0.15960 * 11 10 9 13 13 N 1.40017 * 107.94108 * 180.34740 * 11 10 9 14 14 C 1.31039 * 108.24401 * 359.81161 * 13 11 10 15 15 C 1.35462 * 126.11598 * 85.00195 * 10 9 7 16 16 C 1.51286 * 142.52815 * 359.97295 * 15 10 9 17 17 C 1.54336 * 105.21063 * 196.89810 * 16 15 10 18 18 C 1.51326 * 142.36018 * 179.97438 * 14 13 11 19 19 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47419 * 60.00374 * 9 7 2 21 21 H 1.08996 * 109.47273 * 299.99645 * 9 7 2 22 22 H 1.08999 * 110.29215 * 315.83220 * 16 15 10 23 23 H 1.08997 * 110.29482 * 77.86473 * 16 15 10 24 24 H 1.08994 * 110.77431 * 91.76754 * 17 16 15 25 25 H 1.09005 * 110.76803 * 214.98632 * 17 16 15 26 26 H 1.08997 * 110.29504 * 43.86161 * 18 14 13 27 27 H 1.09000 * 110.29116 * 281.73110 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 7 2.6743 -4.3111 -1.0860 12 1 2.4209 -4.1363 -2.0059 13 7 3.5619 -5.3024 -0.6503 14 6 3.6501 -5.2292 0.6551 15 6 2.8218 -4.1895 1.0896 16 6 2.8990 -4.0763 2.5963 17 6 4.1752 -4.8471 2.9953 18 6 4.3268 -5.8685 1.8481 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8902 21 1 0.6249 -2.5571 0.8897 22 1 2.9805 -3.0307 2.8932 23 1 2.0215 -4.5317 3.0550 24 1 5.0349 -4.1782 3.0333 25 1 4.0383 -5.3528 3.9512 26 1 5.3812 -6.0443 1.6354 27 1 3.8314 -6.8042 2.1071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259831503.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = 58.007209 kcal Electronic energy + Delta-G solvation = -11564.016793 eV Core-core repulsion = 9515.691303 eV Total energy + Delta-G solvation = -2048.325490 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.75333 -35.73939 -33.44278 -31.06187 -28.86034 -27.75040 -25.92087 -23.21252 -21.70138 -18.89010 -18.49097 -16.47023 -16.16275 -15.14728 -14.62001 -13.60037 -13.43406 -12.93652 -12.43679 -12.20960 -11.77608 -11.43885 -11.25937 -10.82555 -10.73298 -10.65418 -10.60607 -9.86356 -9.60223 -9.58250 -8.51839 -8.46302 -7.44231 -6.14057 -4.18949 2.72079 3.27631 3.31759 3.34457 3.50277 3.52824 4.37775 4.72242 5.21002 5.25304 5.37765 5.62629 5.83833 6.01189 6.10267 6.14406 6.42377 6.54786 6.62657 6.67222 6.88830 7.30863 7.39406 7.49679 7.81049 8.04813 8.23930 8.49590 8.84924 9.45766 10.95621 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047152 B = 0.010450 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.682879 B = 2678.886389 C = 2907.872263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.073 3.927 10 C 0.159 3.841 11 N -0.479 5.479 12 H 0.436 0.564 13 N -0.311 5.311 14 C 0.043 3.957 15 C -0.284 4.284 16 C -0.033 4.033 17 C -0.116 4.116 18 C -0.025 4.025 19 H 0.265 0.735 20 H 0.029 0.971 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -7.102 3.846 9.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.034 3.966 10 C 0.031 3.969 11 N -0.187 5.187 12 H 0.279 0.721 13 N -0.133 5.133 14 C -0.124 4.124 15 C -0.295 4.295 16 C -0.071 4.071 17 C -0.154 4.154 18 C -0.065 4.065 19 H 0.074 0.926 20 H 0.047 0.953 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.270 -7.606 2.805 9.669 hybrid contribution -0.033 1.519 0.013 1.519 sum 5.236 -6.087 2.818 8.510 Atomic orbital electron populations 1.69936 1.06037 1.27225 1.49915 1.24984 0.94901 0.99324 0.94867 0.86534 0.79500 0.82490 0.78830 1.20198 1.21114 1.19994 1.20923 0.93101 0.89517 1.51878 0.92378 1.18062 0.91563 0.87880 0.99111 1.21299 0.96154 0.93635 0.85856 1.46290 1.36640 1.27065 1.08664 0.72056 1.76803 1.13911 1.11546 1.11069 1.23032 0.99141 0.98159 0.92084 1.20331 1.08622 1.04268 0.96282 1.20173 0.96386 1.00539 0.90032 1.22330 0.98722 0.97365 0.97022 1.20388 0.99299 0.97826 0.88967 0.92580 0.95285 0.93454 0.91176 0.91966 0.91216 0.90797 0.91042 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.52 -14.19 9.09 -34.44 -0.31 -14.51 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.07 1.84 5.52 -29.03 -0.16 1.68 15 10 C 0.16 3.62 6.40 -82.24 -0.53 3.09 15 11 N -0.48 -9.95 7.35 33.49 0.25 -9.71 15 12 H 0.44 7.82 8.96 -182.65 -1.64 6.18 15 13 N -0.31 -6.49 12.70 33.86 0.43 -6.06 15 14 C 0.04 0.84 8.10 -82.02 -0.66 0.18 15 15 C -0.28 -6.00 6.78 -104.72 -0.71 -6.71 15 16 C -0.03 -0.57 6.76 -26.90 -0.18 -0.76 15 17 C -0.12 -1.58 7.06 -25.33 -0.18 -1.76 15 18 C -0.03 -0.37 6.76 -26.87 -0.18 -0.55 15 19 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 20 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.05 1.26 8.14 -51.93 -0.42 0.83 15 22 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 LS Contribution 236.28 15.07 3.56 3.56 Total: -1.00 -30.53 236.28 -7.62 -38.15 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.56 Total: 0.51 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -3.01 Total: -17.73 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 1.41 Total: -40.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.53 -7.62 -38.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831503.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.159 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds