Wall clock time and date at job start Mon Mar 30 2020 02:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48492 * 109.47198 * 240.00349 * 3 2 1 5 5 H 1.48504 * 109.46895 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47140 * 119.99996 * 3 2 1 7 7 C 1.37876 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.46856 * 180.02562 * 9 7 2 11 11 N 1.34886 * 126.11359 * 264.95505 * 10 9 7 12 12 H 0.97007 * 126.02956 * 0.15960 * 11 10 9 13 13 N 1.40017 * 107.94108 * 180.34740 * 11 10 9 14 14 C 1.31039 * 108.24401 * 359.81161 * 13 11 10 15 15 C 1.35462 * 126.11598 * 85.00195 * 10 9 7 16 16 C 1.51286 * 142.52815 * 359.97295 * 15 10 9 17 17 C 1.54336 * 105.21063 * 196.89810 * 16 15 10 18 18 C 1.51326 * 142.36018 * 179.97438 * 14 13 11 19 19 H 0.96999 * 120.00130 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.47419 * 60.00374 * 9 7 2 21 21 H 1.08996 * 109.47273 * 299.99645 * 9 7 2 22 22 H 1.08999 * 110.29215 * 315.83220 * 16 15 10 23 23 H 1.08997 * 110.29482 * 77.86473 * 16 15 10 24 24 H 1.08994 * 110.77431 * 91.76754 * 17 16 15 25 25 H 1.09005 * 110.76803 * 214.98632 * 17 16 15 26 26 H 1.08997 * 110.29504 * 43.86161 * 18 14 13 27 27 H 1.09000 * 110.29116 * 281.73110 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 7 2.6743 -4.3111 -1.0860 12 1 2.4209 -4.1363 -2.0059 13 7 3.5619 -5.3024 -0.6503 14 6 3.6501 -5.2292 0.6551 15 6 2.8218 -4.1895 1.0896 16 6 2.8990 -4.0763 2.5963 17 6 4.1752 -4.8471 2.9953 18 6 4.3268 -5.8685 1.8481 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8902 21 1 0.6249 -2.5571 0.8897 22 1 2.9805 -3.0307 2.8932 23 1 2.0215 -4.5317 3.0550 24 1 5.0349 -4.1782 3.0333 25 1 4.0383 -5.3528 3.9512 26 1 5.3812 -6.0443 1.6354 27 1 3.8314 -6.8042 2.1071 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831503.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:21 Heat of formation + Delta-G solvation = 38.689059 kcal Electronic energy + Delta-G solvation = -11564.854491 eV Core-core repulsion = 9515.691303 eV Total energy + Delta-G solvation = -2049.163188 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.33103 -37.08535 -35.49635 -32.90396 -30.44134 -29.35042 -27.50114 -25.16075 -23.12897 -20.34458 -20.06146 -18.59832 -17.83447 -16.57658 -16.43516 -15.15027 -14.99026 -14.46343 -14.24746 -13.70484 -13.49967 -13.28729 -12.70673 -12.62819 -12.50714 -11.90591 -11.79818 -11.78050 -11.63415 -11.21449 -10.64247 -10.05968 -9.09812 -8.25923 -6.39922 1.05933 1.39882 1.41355 1.50168 1.89952 1.98660 2.39143 3.05731 3.32609 3.95387 4.30356 4.37074 4.39093 4.58999 4.86000 4.95105 5.04205 5.09737 5.18791 5.29145 5.35185 5.48911 5.61719 5.67464 5.84728 6.03338 6.53228 6.69084 6.89122 7.29302 8.83077 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047152 B = 0.010450 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.682879 B = 2678.886389 C = 2907.872263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.049 0.951 9 C 0.086 3.914 10 C 0.127 3.873 11 N -0.480 5.480 12 H 0.442 0.558 13 N -0.323 5.323 14 C 0.040 3.960 15 C -0.300 4.300 16 C -0.040 4.040 17 C -0.103 4.103 18 C -0.024 4.024 19 H 0.269 0.731 20 H 0.013 0.987 21 H 0.026 0.974 22 H 0.053 0.947 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -7.584 5.021 11.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.047 3.953 10 C -0.001 4.001 11 N -0.189 5.189 12 H 0.287 0.713 13 N -0.145 5.145 14 C -0.127 4.127 15 C -0.311 4.311 16 C -0.079 4.079 17 C -0.140 4.140 18 C -0.063 4.063 19 H 0.078 0.922 20 H 0.031 0.969 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.132 0.868 26 H 0.111 0.889 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.839 -8.096 3.970 11.317 hybrid contribution -0.548 1.618 -0.351 1.743 sum 6.291 -6.478 3.619 9.728 Atomic orbital electron populations 1.70041 1.07489 1.28344 1.50433 1.25826 0.95745 1.02841 0.94164 0.85490 0.78333 0.78118 0.79082 1.19621 1.20214 1.19247 1.21144 0.92828 0.90870 1.52220 0.93221 1.17715 0.91657 0.88720 0.97227 1.21045 0.97320 0.94238 0.87533 1.46309 1.36774 1.27021 1.08766 0.71282 1.76755 1.13996 1.11558 1.12231 1.23994 0.98601 0.97788 0.92332 1.20978 1.07928 1.04199 0.97965 1.20384 0.99272 1.00496 0.87733 1.22355 0.96442 0.96829 0.98420 1.20672 1.00369 0.98642 0.86578 0.92242 0.96853 0.95609 0.92856 0.90853 0.90812 0.86848 0.88856 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.88 13.29 21.45 0.28 -53.60 15 2 C 0.01 0.76 5.46 84.65 0.46 1.22 15 3 Si 0.97 43.44 29.54 68.60 2.03 45.47 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 7 C -0.53 -29.99 9.09 25.60 0.23 -29.75 15 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 15 9 C 0.09 4.52 5.52 29.10 0.16 4.68 15 10 C 0.13 5.90 6.40 41.45 0.27 6.17 15 11 N -0.48 -20.24 7.35 -47.95 -0.35 -20.59 15 12 H 0.44 16.35 8.96 -213.37 -1.91 14.44 15 13 N -0.32 -13.24 12.70 -46.80 -0.59 -13.84 15 14 C 0.04 1.51 8.10 43.27 0.35 1.86 15 15 C -0.30 -12.53 6.78 -19.93 -0.14 -12.66 15 16 C -0.04 -1.35 6.76 30.49 0.21 -1.14 15 17 C -0.10 -2.40 7.06 31.50 0.22 -2.17 15 18 C -0.02 -0.59 6.76 30.50 0.21 -0.39 15 19 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 20 H 0.01 0.72 8.14 -2.39 -0.02 0.70 15 21 H 0.03 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 25 H 0.11 1.81 8.14 -2.38 -0.02 1.79 15 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 15 27 H 0.11 2.16 8.14 -2.39 -0.02 2.14 15 Total: -1.00 -65.81 236.28 2.59 -63.22 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -0.74 Total: 11.53 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 1.97 Total: -32.19 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -0.66 Total: -88.02 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.81 2.59 -63.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831503.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.906 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds