Wall clock time and date at job start Mon Mar 30 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34856 * 125.88944 * 2 1 4 4 C 1.40886 * 107.41377 * 180.02562 * 3 2 1 5 5 C 1.34852 * 107.42119 * 359.73779 * 4 3 2 6 6 C 1.50694 * 125.89208 * 180.25084 * 5 4 3 7 7 C 1.50700 * 115.54725 * 188.34982 * 6 5 4 8 8 H 1.08007 * 119.99995 * 245.21823 * 7 6 5 9 9 C 1.37882 * 120.00415 * 65.22543 * 7 6 5 10 10 N 1.31513 * 119.99348 * 5.20983 * 9 7 6 11 11 Si 1.86796 * 120.00277 * 185.21455 * 9 7 6 12 12 H 1.48499 * 109.47303 * 59.99678 * 11 9 7 13 13 H 1.48494 * 109.46952 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46826 * 299.99767 * 11 9 7 15 15 C 1.52997 * 117.50004 * 42.68206 * 6 5 4 16 16 C 1.53003 * 117.50170 * 334.02092 * 6 5 4 17 17 N 1.36333 * 125.89049 * 180.02562 * 2 1 3 18 18 H 0.97001 * 125.64070 * 359.97438 * 17 2 1 19 19 H 1.09004 * 109.46883 * 269.97433 * 1 2 3 20 20 H 1.09001 * 109.47065 * 29.96902 * 1 2 3 21 21 H 1.08992 * 109.47251 * 149.97236 * 1 2 3 22 22 H 1.07995 * 126.29041 * 0.02562 * 3 2 1 23 23 H 1.08007 * 126.28905 * 180.02562 * 4 3 2 24 24 H 0.97001 * 119.99857 * 174.99836 * 10 9 7 25 25 H 1.09000 * 117.49893 * 359.97438 * 15 6 5 26 26 H 1.09003 * 117.49984 * 145.01940 * 15 6 5 27 27 H 1.09004 * 117.50006 * 214.98308 * 16 6 5 28 28 H 1.08996 * 117.49728 * 359.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2976 1.0925 0.0000 4 6 3.6339 0.6461 -0.0006 5 6 3.6090 -0.7022 0.0049 6 6 4.8134 -1.6080 0.0118 7 6 4.5247 -3.0745 -0.1803 8 1 4.7282 -3.7740 0.6172 9 6 4.0010 -3.5236 -1.3741 10 7 3.8490 -2.6903 -2.3802 11 14 3.5072 -5.3152 -1.5624 12 1 2.4598 -5.6476 -0.5635 13 1 2.9754 -5.5410 -2.9303 14 1 4.6934 -6.1812 -1.3427 15 6 5.9753 -1.2315 0.9332 16 6 6.1129 -1.0601 -0.5816 17 7 2.3063 -1.1045 -0.0005 18 1 1.9990 -2.0245 -0.0006 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8903 -0.5134 21 1 -0.3633 -0.8897 -0.5142 22 1 1.9671 2.1207 0.0004 23 1 4.5160 1.2692 -0.0004 24 1 3.5492 -3.0199 -3.2418 25 1 5.8687 -0.3283 1.5342 26 1 6.5312 -2.0445 1.4002 27 1 6.7592 -1.7605 -1.1107 28 1 6.0965 -0.0446 -0.9774 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259832532.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:26 Heat of formation + Delta-G solvation = 40.111880 kcal Electronic energy + Delta-G solvation = -11752.022039 eV Core-core repulsion = 9768.346460 eV Total energy + Delta-G solvation = -1983.675578 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.76468 -37.84920 -34.20789 -31.94842 -31.41506 -27.78434 -26.53935 -22.96961 -22.50098 -20.84168 -20.13526 -18.87217 -16.94035 -16.53088 -15.30766 -15.17079 -14.78315 -14.02018 -14.00420 -13.45689 -13.30885 -13.27845 -12.94483 -12.84784 -12.42577 -12.33292 -12.06652 -11.50412 -10.98031 -10.63306 -10.38362 -9.44248 -8.27411 -8.10529 -6.30617 1.38704 1.40973 1.48134 1.71059 2.31029 2.37255 2.83762 3.08954 3.67628 4.30372 4.33260 4.57641 4.63250 4.80687 4.82694 4.87801 4.95147 4.96237 5.14148 5.22269 5.28687 5.57718 5.61150 5.66933 5.76200 6.25167 6.50502 6.66750 6.84984 7.13589 7.37459 8.90880 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.016622 C = 0.012134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.262559 B = 1684.117221 C = 2306.997690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.024 4.024 3 C -0.216 4.216 4 C -0.258 4.258 5 C 0.106 3.894 6 C 0.063 3.937 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.034 3.966 10 N -0.892 5.892 11 Si 0.946 3.054 12 H -0.266 1.266 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.174 4.174 16 C -0.166 4.166 17 N -0.535 5.535 18 H 0.407 0.593 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.059 0.941 22 H 0.145 0.855 23 H 0.122 0.878 24 H 0.260 0.740 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.486 2.812 3.760 6.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 C -0.241 4.241 4 C -0.282 4.282 5 C -0.010 4.010 6 C 0.062 3.938 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.169 4.169 10 N -0.528 5.528 11 Si 0.772 3.228 12 H -0.191 1.191 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.211 4.211 16 C -0.204 4.204 17 N -0.128 5.128 18 H 0.243 0.757 19 H 0.098 0.902 20 H 0.109 0.891 21 H 0.078 0.922 22 H 0.162 0.838 23 H 0.140 0.860 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.694 2.709 3.577 6.494 hybrid contribution 0.051 -1.311 -0.537 1.418 sum -4.643 1.398 3.039 5.723 Atomic orbital electron populations 1.20266 0.86118 1.03347 1.03026 1.20859 0.94784 0.86214 1.11817 1.20714 0.92370 0.97889 1.13122 1.20609 0.97539 0.93303 1.16751 1.19983 0.85089 0.92989 1.02962 1.17250 0.83959 0.92487 1.00082 1.20683 1.43880 0.91293 1.00215 0.92499 1.25657 0.94919 1.00799 0.95490 1.70163 1.45371 1.35647 1.01608 0.85795 0.78969 0.80894 0.77169 1.19071 1.21248 1.19871 1.22999 1.03723 1.02020 0.92373 1.22676 1.03124 0.99718 0.94858 1.41803 1.05754 1.08115 1.57078 0.75719 0.90151 0.89114 0.92215 0.83765 0.85998 0.93065 0.89243 0.89460 0.91378 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.42 71.24 0.74 -1.21 15 2 C -0.02 -0.96 7.16 41.08 0.29 -0.66 15 3 C -0.22 -8.67 10.77 22.14 0.24 -8.43 15 4 C -0.26 -11.68 9.95 22.14 0.22 -11.46 15 5 C 0.11 5.15 6.22 41.08 0.26 5.41 15 6 C 0.06 3.18 1.84 -53.68 -0.10 3.08 15 7 C -0.52 -27.79 8.31 25.60 0.21 -27.57 15 8 H 0.06 3.00 7.82 -2.91 -0.02 2.97 15 9 C 0.03 1.77 5.21 84.66 0.44 2.21 15 10 N -0.89 -49.82 13.01 21.45 0.28 -49.54 15 11 Si 0.95 41.35 29.54 68.60 2.03 43.38 15 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 13 H -0.29 -12.49 7.11 99.48 0.71 -11.79 15 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 15 C -0.17 -7.52 9.79 30.62 0.30 -7.22 15 16 C -0.17 -7.84 9.73 30.62 0.30 -7.55 15 17 N -0.54 -24.26 5.92 -171.12 -1.01 -25.27 15 18 H 0.41 18.41 8.37 -92.71 -0.78 17.63 15 19 H 0.08 1.91 8.14 -2.38 -0.02 1.90 15 20 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.14 4.83 8.06 -2.91 -0.02 4.81 15 23 H 0.12 5.20 7.71 -2.91 -0.02 5.18 15 24 H 0.26 14.05 8.32 -92.71 -0.77 13.28 15 25 H 0.09 3.53 8.11 -2.39 -0.02 3.52 15 26 H 0.09 3.59 8.14 -2.39 -0.02 3.57 15 27 H 0.07 3.33 8.14 -2.39 -0.02 3.31 15 28 H 0.07 3.35 7.50 -2.39 -0.02 3.33 15 Total: -1.00 -59.52 245.79 4.57 -54.96 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.37 Total: 29.90 kcal Atomic # 6 Polarization: -56.32 SS G_CDS: 2.90 Total: -53.42 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -0.73 Total: -74.81 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -59.52 4.57 -54.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259832532.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.068 kcal (2) G-P(sol) polarization free energy of solvation -59.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds