Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36342 * 125.63614 * 2 1 4 4 C 1.34848 * 108.21716 * 179.97438 * 3 2 1 5 5 C 1.40889 * 107.41819 * 359.76859 * 4 3 2 6 6 C 1.34847 * 107.41753 * 0.38057 * 5 4 3 7 7 C 1.50697 * 125.89533 * 179.88595 * 6 5 4 8 8 C 1.50698 * 115.55039 * 95.66092 * 7 6 5 9 9 H 1.08004 * 119.99233 * 95.71681 * 8 7 6 10 10 C 1.37868 * 120.00479 * 275.71719 * 8 7 6 11 11 N 1.31520 * 120.00095 * 185.79246 * 10 8 7 12 12 Si 1.86803 * 120.00237 * 5.52064 * 10 8 7 13 13 H 1.48504 * 109.47200 * 84.85679 * 12 10 8 14 14 H 1.48493 * 109.47326 * 204.86269 * 12 10 8 15 15 H 1.48506 * 109.46871 * 324.86266 * 12 10 8 16 16 C 1.52995 * 117.50210 * 241.34106 * 7 6 5 17 17 C 1.53001 * 117.49518 * 310.00061 * 7 6 5 18 18 H 1.09003 * 109.46903 * 275.00733 * 1 2 3 19 19 H 1.09005 * 109.46768 * 35.00162 * 1 2 3 20 20 H 1.08993 * 109.47420 * 155.00115 * 1 2 3 21 21 H 1.08003 * 125.89358 * 0.02562 * 3 2 1 22 22 H 1.08006 * 126.29073 * 179.97438 * 4 3 2 23 23 H 1.07998 * 126.29191 * 180.23953 * 5 4 3 24 24 H 0.96994 * 119.99855 * 179.71930 * 11 10 8 25 25 H 1.08994 * 117.50337 * 214.99992 * 16 7 6 26 26 H 1.09012 * 117.49672 * 0.02562 * 16 7 6 27 27 H 1.09002 * 117.50059 * 359.97065 * 17 7 6 28 28 H 1.09000 * 117.50216 * 144.99327 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5460 -0.7045 0.0064 6 6 2.2594 -1.1081 0.0006 7 6 1.7818 -2.5374 0.0013 8 6 1.4416 -3.1084 1.3537 9 1 0.4190 -3.1006 1.7013 10 6 2.4355 -3.6405 2.1473 11 7 2.1253 -4.2407 3.2758 12 14 4.2220 -3.5158 1.6162 13 1 4.7752 -2.2055 2.0433 14 1 5.0029 -4.6113 2.2446 15 1 4.3082 -3.6313 0.1381 16 6 0.9468 -3.0038 -1.1929 17 6 2.3907 -3.4861 -1.0332 18 1 -0.3633 0.0897 1.0238 19 1 -0.3633 0.8419 -0.5895 20 1 -0.3634 -0.9313 -0.4343 21 1 1.9172 2.1325 0.0004 22 1 4.4166 1.3437 0.0003 23 1 4.4165 -1.3437 0.0119 24 1 2.8243 -4.6186 3.8320 25 1 0.1513 -3.7236 -1.0003 26 1 0.7432 -2.2769 -1.9793 27 1 3.1364 -3.0764 -1.7145 28 1 2.5452 -4.5233 -0.7355 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = 60.307024 kcal Electronic energy + Delta-G solvation = -11960.436915 eV Core-core repulsion = 9977.637064 eV Total energy + Delta-G solvation = -1982.799851 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.99785 -38.06544 -34.26929 -33.55081 -29.58794 -27.74735 -27.06477 -23.59351 -22.58543 -21.05042 -19.93752 -18.76225 -17.27194 -16.76478 -15.87243 -15.45050 -15.01864 -14.45306 -14.17919 -13.89442 -13.41245 -13.16948 -12.93061 -12.84667 -12.51682 -12.17167 -12.00254 -11.63957 -10.91971 -10.78874 -10.38700 -9.34914 -8.69726 -8.33686 -6.41147 1.37478 1.42503 1.51060 1.55922 2.23384 2.28758 2.39019 3.04057 3.22079 4.00395 4.14312 4.35134 4.36575 4.46919 4.52978 4.75054 4.78574 4.83150 4.91902 4.96203 5.15123 5.43278 5.52004 5.56699 5.69089 6.18209 6.29558 6.50598 6.64515 6.77954 7.30420 8.80304 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.035567 B = 0.017823 C = 0.015810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.065416 B = 1570.654506 C = 1770.611588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.450 5.450 3 C -0.028 4.028 4 C -0.220 4.220 5 C -0.252 4.252 6 C 0.070 3.930 7 C 0.024 3.976 8 C -0.482 4.482 9 H 0.037 0.963 10 C 0.030 3.970 11 N -0.945 5.945 12 Si 0.923 3.077 13 H -0.276 1.276 14 H -0.301 1.301 15 H -0.214 1.214 16 C -0.159 4.159 17 C -0.165 4.165 18 H 0.063 0.937 19 H 0.112 0.888 20 H 0.080 0.920 21 H 0.196 0.804 22 H 0.148 0.852 23 H 0.112 0.888 24 H 0.266 0.734 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 8.674 -9.477 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.125 5.125 3 C -0.157 4.157 4 C -0.245 4.245 5 C -0.276 4.276 6 C -0.044 4.044 7 C 0.023 3.977 8 C -0.520 4.520 9 H 0.055 0.945 10 C -0.168 4.168 11 N -0.584 5.584 12 Si 0.749 3.251 13 H -0.202 1.202 14 H -0.229 1.229 15 H -0.137 1.137 16 C -0.196 4.196 17 C -0.203 4.203 18 H 0.082 0.918 19 H 0.130 0.870 20 H 0.099 0.901 21 H 0.212 0.788 22 H 0.166 0.834 23 H 0.130 0.870 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.775 8.602 -9.337 12.719 hybrid contribution 0.808 -0.331 0.665 1.098 sum 0.033 8.271 -8.672 11.984 Atomic orbital electron populations 1.22123 0.76282 1.05092 1.03318 1.44107 1.07151 1.05317 1.55918 1.22208 0.90055 0.92239 1.11159 1.21037 0.97283 0.94057 1.12102 1.20731 0.95292 0.96249 1.15357 1.20152 0.90201 0.88460 1.05552 1.17451 1.03019 0.86932 0.90324 1.20349 0.94106 1.37507 1.00005 0.94455 1.25700 1.03375 0.93376 0.94355 1.70030 1.34897 1.38717 1.14781 0.86258 0.79884 0.76850 0.82123 1.20236 1.22875 1.13684 1.22958 0.93995 1.03235 0.99438 1.22969 0.96142 0.99095 1.02087 0.91838 0.86966 0.90143 0.78752 0.83400 0.86987 0.92562 0.89314 0.88449 0.88981 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.12 10.97 127.77 1.40 3.52 15 2 N -0.45 -16.66 3.15 -533.25 -1.68 -18.34 15 3 C -0.03 -0.91 11.44 83.21 0.95 0.04 15 4 C -0.22 -8.04 10.86 22.14 0.24 -7.80 15 5 C -0.25 -11.00 9.21 22.14 0.20 -10.79 15 6 C 0.07 3.08 5.71 41.08 0.23 3.31 15 7 C 0.02 1.13 0.81 -53.68 -0.04 1.09 15 8 C -0.48 -27.56 9.38 25.60 0.24 -27.32 15 9 H 0.04 2.35 8.06 -2.91 -0.02 2.32 15 10 C 0.03 1.80 5.47 84.65 0.46 2.26 15 11 N -0.94 -59.85 13.96 21.44 0.30 -59.55 15 12 Si 0.92 46.05 23.58 68.60 1.62 47.67 15 13 H -0.28 -14.01 6.92 99.48 0.69 -13.32 15 14 H -0.30 -14.97 7.11 99.48 0.71 -14.27 15 15 H -0.21 -9.58 5.04 99.48 0.50 -9.08 15 16 C -0.16 -6.12 8.68 30.62 0.27 -5.85 15 17 C -0.17 -6.85 6.89 30.62 0.21 -6.64 15 18 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 19 H 0.11 2.24 8.14 -2.38 -0.02 2.22 15 20 H 0.08 2.43 6.44 -2.39 -0.02 2.42 15 21 H 0.20 4.45 8.06 -2.91 -0.02 4.42 15 22 H 0.15 4.51 8.06 -2.91 -0.02 4.49 15 23 H 0.11 4.97 5.83 -2.91 -0.02 4.96 15 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 15 25 H 0.09 3.39 8.14 -2.39 -0.02 3.37 15 26 H 0.10 3.22 8.08 -2.38 -0.02 3.20 15 27 H 0.09 3.51 8.14 -2.39 -0.02 3.49 15 28 H 0.08 3.52 7.68 -2.39 -0.02 3.50 15 Total: -1.00 -68.99 232.24 5.31 -63.67 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.91 Total: 14.73 kcal Atomic # 6 Polarization: -52.35 SS G_CDS: 4.17 Total: -48.18 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.38 Total: -77.90 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.62 Total: 47.67 kcal Total: -68.99 5.31 -63.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.981 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds