Wall clock time and date at job start Mon Mar 30 2020 02:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48498 * 109.46880 * 240.00110 * 3 2 1 5 5 H 1.48500 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47014 * 120.00076 * 3 2 1 7 7 C 1.37878 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99827 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.46932 * 300.01831 * 9 7 2 11 11 C 1.53208 * 109.44240 * 180.02562 * 9 7 2 12 12 C 1.53362 * 109.46467 * 169.73919 * 11 9 7 13 13 C 1.50837 * 108.41534 * 49.93425 * 12 11 9 14 14 C 1.39289 * 127.90203 * 163.37859 * 13 12 11 15 15 N 1.31076 * 108.08339 * 180.02562 * 14 13 12 16 16 N 1.40298 * 108.26637 * 0.02562 * 15 14 13 17 17 H 0.96996 * 126.09586 * 179.91731 * 16 15 14 18 18 C 1.34326 * 107.81671 * 359.93822 * 16 15 14 19 19 C 1.50828 * 128.03409 * 180.13668 * 18 16 15 20 20 H 0.97000 * 119.99825 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.50876 * 49.72138 * 11 9 7 22 22 H 1.09005 * 109.46222 * 289.72192 * 11 9 7 23 23 H 1.09002 * 109.68257 * 290.19217 * 12 11 9 24 24 H 1.08999 * 109.68084 * 169.67635 * 12 11 9 25 25 H 1.07995 * 125.96159 * 0.07745 * 14 13 12 26 26 H 1.09000 * 109.68034 * 283.08471 * 19 18 16 27 27 H 1.08998 * 109.68620 * 43.60671 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6244 -2.5561 0.8918 11 6 2.2470 -3.6632 0.0027 12 6 1.4982 -4.9764 0.2615 13 6 0.3232 -5.0486 -0.6815 14 6 -0.4322 -6.1679 -1.0232 15 7 -1.3566 -5.7911 -1.8726 16 7 -1.2131 -4.4135 -2.0962 17 1 -1.7625 -3.8693 -2.6817 18 6 -0.1790 -3.9823 -1.3551 19 6 0.3683 -2.5808 -1.2497 20 1 -0.4850 0.8401 0.0004 21 1 2.9884 -3.5072 0.7864 22 1 2.7467 -3.7145 -0.9647 23 1 1.1439 -5.0000 1.2920 24 1 2.1646 -5.8202 0.0830 25 1 -0.2829 -7.1711 -0.6523 26 1 0.9625 -2.3513 -2.1342 27 1 -0.4544 -1.8707 -1.1657 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259884602.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:45 Heat of formation + Delta-G solvation = 33.463866 kcal Electronic energy + Delta-G solvation = -11811.136034 eV Core-core repulsion = 9761.746265 eV Total energy + Delta-G solvation = -2049.389769 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.24362 -37.64132 -34.46847 -33.10333 -30.53227 -29.81933 -26.80952 -23.98404 -22.67275 -22.06040 -19.40833 -18.46972 -17.88272 -16.47421 -15.94785 -15.10579 -14.89354 -14.49938 -14.35307 -13.81594 -13.64112 -12.91773 -12.82319 -12.50580 -12.46540 -12.22823 -11.48398 -11.32154 -10.95365 -10.83040 -10.53853 -10.27559 -9.07844 -8.09608 -6.22547 1.04053 1.45906 1.46058 1.53783 1.96087 2.06164 2.45567 3.19544 4.02861 4.08530 4.29859 4.47951 4.61926 4.74884 4.95438 4.99019 5.07854 5.17534 5.34223 5.37329 5.60324 5.70645 5.87054 5.96191 6.03720 6.37003 6.49315 6.82491 6.89489 7.46555 8.95664 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064162 B = 0.010857 C = 0.009648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.291091 B = 2578.353110 C = 2901.489887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.053 3.947 10 H -0.002 1.002 11 C -0.105 4.105 12 C -0.032 4.032 13 C -0.263 4.263 14 C 0.057 3.943 15 N -0.335 5.335 16 N -0.477 5.477 17 H 0.441 0.559 18 C 0.092 3.908 19 C -0.038 4.038 20 H 0.261 0.739 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.215 0.785 26 H 0.056 0.944 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -7.139 -1.682 7.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.034 3.966 10 H 0.016 0.984 11 C -0.142 4.142 12 C -0.070 4.070 13 C -0.274 4.274 14 C -0.128 4.128 15 N -0.158 5.158 16 N -0.185 5.185 17 H 0.286 0.714 18 C -0.038 4.038 19 C -0.078 4.078 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.231 0.769 26 H 0.075 0.925 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.222 -7.425 -2.393 7.804 hybrid contribution 0.452 1.738 0.142 1.801 sum 0.674 -5.687 -2.251 6.154 Atomic orbital electron populations 1.69999 1.07193 1.27306 1.51400 1.25743 0.95627 1.02375 0.94671 0.85676 0.78396 0.79099 0.78884 1.19572 1.21291 1.19692 1.21571 0.93327 0.91709 1.50496 0.92326 1.18619 0.92823 0.93114 0.92011 0.98421 1.21615 0.97892 0.94224 1.00501 1.19989 0.92876 0.97834 0.96294 1.20274 1.05763 0.92328 1.09032 1.24062 0.92561 1.00680 0.95496 1.77278 1.25102 0.90412 1.22965 1.46084 1.26857 1.07532 1.38007 0.71434 1.21780 0.90002 0.98276 0.93739 1.20375 0.99975 0.87371 1.00062 0.92994 0.92283 0.93292 0.91895 0.89413 0.76887 0.92528 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.46 11.46 21.45 0.25 -51.21 15 2 C 0.01 0.78 5.30 84.65 0.45 1.23 15 3 Si 0.95 42.22 29.54 68.60 2.03 44.25 15 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.53 -28.26 8.53 25.60 0.22 -28.05 15 8 H 0.06 3.03 7.74 -2.91 -0.02 3.00 15 9 C 0.05 2.60 2.07 -11.35 -0.02 2.58 15 10 H 0.00 -0.13 8.11 -2.39 -0.02 -0.15 15 11 C -0.10 -4.16 5.15 30.79 0.16 -4.00 15 12 C -0.03 -1.07 6.28 30.01 0.19 -0.88 15 13 C -0.26 -9.67 5.91 -20.14 -0.12 -9.79 15 14 C 0.06 1.83 12.00 85.06 1.02 2.85 15 15 N -0.33 -11.89 12.71 -57.28 -0.73 -12.62 15 16 N -0.48 -17.30 7.34 -47.98 -0.35 -17.65 15 17 H 0.44 13.66 8.96 -213.20 -1.91 11.75 15 18 C 0.09 3.73 7.08 41.64 0.29 4.02 15 19 C -0.04 -1.76 5.19 30.01 0.16 -1.61 15 20 H 0.26 14.00 8.31 -92.71 -0.77 13.23 15 21 H 0.06 2.25 8.11 -2.39 -0.02 2.23 15 22 H 0.05 1.91 8.11 -2.38 -0.02 1.89 15 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 25 H 0.21 4.88 8.06 -2.91 -0.02 4.86 15 26 H 0.06 2.62 8.12 -2.39 -0.02 2.60 15 27 H 0.07 3.82 6.44 -2.39 -0.02 3.81 15 Total: -1.00 -59.89 228.14 2.80 -57.09 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.74 Total: 13.78 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 2.34 Total: -33.64 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -0.83 Total: -81.48 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -59.89 2.80 -57.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884602.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.557 kcal (2) G-P(sol) polarization free energy of solvation -59.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds