Wall clock time and date at job start Mon Mar 30 2020 01:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46932 * 2 1 4 4 C 1.38675 * 120.78958 * 269.97721 * 3 2 1 5 5 C 1.38184 * 119.16617 * 180.02562 * 4 3 2 6 6 N 1.31882 * 120.76302 * 0.02562 * 5 4 3 7 7 C 1.31861 * 121.72456 * 359.68124 * 6 5 4 8 8 C 1.50704 * 119.61576 * 180.29006 * 7 6 5 9 9 C 1.50696 * 109.47262 * 305.28728 * 8 7 6 10 10 H 1.08004 * 120.00224 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00411 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99761 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00452 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46998 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47448 * 119.99922 * 13 11 9 16 16 H 1.48506 * 109.46889 * 239.99772 * 13 11 9 17 17 C 1.38221 * 120.76518 * 0.58353 * 7 6 5 18 18 H 1.09009 * 109.46870 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47117 * 299.99784 * 1 2 3 20 20 H 1.08995 * 109.47537 * 60.00529 * 1 2 3 21 21 H 1.08997 * 109.47117 * 240.00216 * 2 1 3 22 22 H 1.09004 * 109.47289 * 119.99439 * 2 1 3 23 23 H 1.08006 * 120.41367 * 0.04222 * 4 3 2 24 24 H 1.07993 * 119.61608 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47103 * 65.28898 * 8 7 6 26 26 H 1.09005 * 109.46670 * 185.28714 * 8 7 6 27 27 H 0.96997 * 120.00043 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.42313 * 179.73507 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2693 2.0899 -1.1913 5 6 2.7302 3.3921 -1.1521 6 7 2.9448 3.9973 -0.0002 7 6 2.7250 3.3941 1.1515 8 6 2.9802 4.1331 2.4399 9 6 4.3948 4.6527 2.4493 10 1 5.0440 4.4668 1.6064 11 6 4.8603 5.3654 3.5338 12 7 4.0696 5.5922 4.5601 13 14 6.6135 6.0100 3.5452 14 1 7.2911 5.6236 2.2816 15 1 6.5960 7.4900 3.6655 16 1 7.3473 5.4284 4.6978 17 6 2.2690 2.0899 1.1909 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8901 23 1 2.0956 1.5995 -2.1378 24 1 2.9176 3.9198 -2.0755 25 1 2.2856 4.9689 2.5231 26 1 2.8363 3.4558 3.2818 27 1 4.3970 6.0939 5.3229 28 1 2.0949 1.5997 2.1374 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259891047.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:59 Heat of formation + Delta-G solvation = 10.617003 kcal Electronic energy + Delta-G solvation = -11151.961211 eV Core-core repulsion = 9167.006638 eV Total energy + Delta-G solvation = -1984.954572 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.58985 -34.74447 -33.23558 -31.23663 -29.90816 -27.47014 -24.27295 -23.29579 -22.09520 -19.77776 -16.40402 -15.83617 -15.62505 -14.92041 -14.35489 -13.76855 -13.61106 -13.16133 -12.55780 -12.29795 -11.91284 -11.43468 -11.35614 -11.21108 -10.89123 -10.68752 -10.53363 -9.75897 -9.36044 -8.93338 -8.56098 -8.37898 -8.07370 -5.98814 -3.99006 1.85111 1.90643 3.34850 3.41816 3.48357 4.44213 4.58738 4.90085 5.03069 5.16335 5.38353 5.40084 5.51341 5.61104 5.68920 5.80080 5.90793 6.05374 6.20371 6.33481 6.49880 6.64198 6.90293 7.38868 7.56768 7.58996 7.98530 8.35357 8.93178 9.04913 9.63152 11.12622 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.060027 B = 0.008592 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.348178 B = 3258.201426 C = 3485.020893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.047 4.047 4 C -0.207 4.207 5 C 0.096 3.904 6 N -0.476 5.476 7 C 0.175 3.825 8 C 0.057 3.943 9 C -0.497 4.497 10 H 0.060 0.940 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.285 1.285 17 C -0.183 4.183 18 H 0.056 0.944 19 H 0.057 0.943 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.143 0.857 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -9.304 -8.471 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.054 4.054 4 C -0.227 4.227 5 C -0.061 4.061 6 N -0.186 5.186 7 C 0.039 3.961 8 C 0.020 3.980 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.203 4.203 18 H 0.075 0.925 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.138 0.862 24 H 0.161 0.839 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.801 -8.363 -8.292 12.718 hybrid contribution 0.659 -0.480 0.006 0.815 sum -4.143 -8.843 -8.287 12.808 Atomic orbital electron populations 1.21726 0.94732 1.01416 1.02360 1.20515 0.96143 0.92657 1.02704 1.20190 0.96090 0.95798 0.93359 1.21767 1.06072 0.97043 0.97800 1.22740 0.94896 0.91930 0.96572 1.67684 1.14801 1.38252 0.97834 1.22285 0.87655 0.90818 0.95349 1.18347 0.98188 0.95254 0.86197 1.21042 0.96204 1.33643 1.02661 0.92182 1.24994 0.97850 0.96217 0.95539 1.69962 1.35741 1.41094 1.07089 0.86444 0.84575 0.78597 0.77877 1.19733 1.20962 1.21097 1.21960 1.03751 0.96586 0.98027 0.92544 0.92350 0.92661 0.91191 0.90876 0.86215 0.83919 0.94064 0.94657 0.92990 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.16 0.37 -1.20 15 2 C -0.08 -1.01 6.11 -27.88 -0.17 -1.18 15 3 C -0.05 -0.76 5.17 -104.32 -0.54 -1.30 15 4 C -0.21 -3.27 9.82 -39.44 -0.39 -3.66 15 5 C 0.10 1.75 11.18 -17.55 -0.20 1.55 15 6 N -0.48 -10.86 9.95 -9.47 -0.09 -10.95 15 7 C 0.18 4.07 6.13 -82.58 -0.51 3.56 15 8 C 0.06 1.53 5.37 -29.03 -0.16 1.38 15 9 C -0.50 -14.50 8.91 -34.44 -0.31 -14.81 15 10 H 0.06 1.78 7.67 -52.48 -0.40 1.38 15 11 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 12 N -0.90 -27.04 13.29 55.43 0.74 -26.31 15 13 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 15 14 H -0.27 -6.72 7.11 56.52 0.40 -6.32 15 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 17 C -0.18 -3.55 9.42 -39.44 -0.37 -3.92 15 18 H 0.06 0.50 8.14 -51.92 -0.42 0.07 15 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.07 0.75 8.10 -51.93 -0.42 0.33 15 22 H 0.07 0.86 8.10 -51.93 -0.42 0.44 15 23 H 0.12 1.49 8.06 -52.48 -0.42 1.07 15 24 H 0.14 2.12 8.06 -52.49 -0.42 1.69 15 25 H 0.04 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.04 0.95 7.87 -51.93 -0.41 0.54 15 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 28 H 0.13 2.26 7.95 -52.49 -0.42 1.84 15 LS Contribution 248.26 15.07 3.74 3.74 Total: -1.00 -31.44 248.26 -6.74 -38.18 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -3.74 Total: -3.83 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.36 Total: -18.08 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.64 Total: -37.26 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.44 -6.74 -38.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891047.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.798 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds