Wall clock time and date at job start Mon Mar 30 2020 01:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46932 * 2 1 4 4 C 1.38675 * 120.78958 * 269.97721 * 3 2 1 5 5 C 1.38184 * 119.16617 * 180.02562 * 4 3 2 6 6 N 1.31882 * 120.76302 * 0.02562 * 5 4 3 7 7 C 1.31861 * 121.72456 * 359.68124 * 6 5 4 8 8 C 1.50704 * 119.61576 * 180.29006 * 7 6 5 9 9 C 1.50696 * 109.47262 * 305.28728 * 8 7 6 10 10 H 1.08004 * 120.00224 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00411 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99761 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00452 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46998 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47448 * 119.99922 * 13 11 9 16 16 H 1.48506 * 109.46889 * 239.99772 * 13 11 9 17 17 C 1.38221 * 120.76518 * 0.58353 * 7 6 5 18 18 H 1.09009 * 109.46870 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47117 * 299.99784 * 1 2 3 20 20 H 1.08995 * 109.47537 * 60.00529 * 1 2 3 21 21 H 1.08997 * 109.47117 * 240.00216 * 2 1 3 22 22 H 1.09004 * 109.47289 * 119.99439 * 2 1 3 23 23 H 1.08006 * 120.41367 * 0.04222 * 4 3 2 24 24 H 1.07993 * 119.61608 * 179.97438 * 5 4 3 25 25 H 1.09000 * 109.47103 * 65.28898 * 8 7 6 26 26 H 1.09005 * 109.46670 * 185.28714 * 8 7 6 27 27 H 0.96997 * 120.00043 * 180.02562 * 12 11 9 28 28 H 1.08002 * 120.42313 * 179.73507 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2693 2.0899 -1.1913 5 6 2.7302 3.3921 -1.1521 6 7 2.9448 3.9973 -0.0002 7 6 2.7250 3.3941 1.1515 8 6 2.9802 4.1331 2.4399 9 6 4.3948 4.6527 2.4493 10 1 5.0440 4.4668 1.6064 11 6 4.8603 5.3654 3.5338 12 7 4.0696 5.5922 4.5601 13 14 6.6135 6.0100 3.5452 14 1 7.2911 5.6236 2.2816 15 1 6.5960 7.4900 3.6655 16 1 7.3473 5.4284 4.6978 17 6 2.2690 2.0899 1.1909 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8901 23 1 2.0956 1.5995 -2.1378 24 1 2.9176 3.9198 -2.0755 25 1 2.2856 4.9689 2.5231 26 1 2.8363 3.4558 3.2818 27 1 4.3970 6.0939 5.3229 28 1 2.0949 1.5997 2.1374 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891047.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:59 Heat of formation + Delta-G solvation = -8.781498 kcal Electronic energy + Delta-G solvation = -11152.802393 eV Core-core repulsion = 9167.006638 eV Total energy + Delta-G solvation = -1985.795754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.06555 -36.09272 -35.18864 -33.04385 -31.11068 -29.38692 -25.80963 -24.91521 -23.53281 -21.24604 -18.54787 -17.31790 -17.11197 -16.58573 -16.02107 -15.15195 -14.76268 -14.51189 -14.24896 -13.92693 -13.45513 -13.24158 -12.87638 -12.65580 -12.49544 -12.26241 -11.95079 -11.60986 -11.51826 -10.64408 -10.33081 -10.05655 -9.67942 -8.21724 -6.31057 0.37267 0.50420 1.37853 1.39114 1.52904 2.40241 3.01573 3.12339 3.70025 3.78251 3.94522 4.29561 4.38245 4.45476 4.51012 4.65287 4.94901 4.98518 5.02974 5.08115 5.15841 5.29038 5.38908 5.50565 5.56798 5.72277 5.99153 6.17852 6.77755 7.33858 7.41052 8.89990 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.060027 B = 0.008592 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.348178 B = 3258.201426 C = 3485.020893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.040 4.040 4 C -0.187 4.187 5 C 0.084 3.916 6 N -0.521 5.521 7 C 0.137 3.863 8 C 0.065 3.935 9 C -0.516 4.516 10 H 0.049 0.951 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.272 1.272 17 C -0.191 4.191 18 H 0.081 0.919 19 H 0.042 0.958 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.168 0.832 24 H 0.175 0.825 25 H 0.006 0.994 26 H 0.020 0.980 27 H 0.266 0.734 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 -10.979 -10.406 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.048 4.048 4 C -0.206 4.206 5 C -0.073 4.073 6 N -0.231 5.231 7 C 0.002 3.998 8 C 0.028 3.972 9 C -0.555 4.555 10 H 0.067 0.933 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.793 3.207 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.197 1.197 17 C -0.211 4.211 18 H 0.100 0.900 19 H 0.061 0.939 20 H 0.077 0.923 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.185 0.815 24 H 0.192 0.808 25 H 0.024 0.976 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.506 -10.047 -10.226 15.027 hybrid contribution 0.491 -0.025 0.507 0.706 sum -4.015 -10.072 -9.719 14.561 Atomic orbital electron populations 1.21722 0.93518 1.02940 1.01847 1.20628 0.96994 0.89777 1.04321 1.20681 0.94263 0.97668 0.92147 1.22261 1.02929 0.95874 0.99544 1.23325 0.94580 0.93398 0.95994 1.67490 1.16495 1.40134 0.98976 1.21741 0.91452 0.92416 0.94224 1.18043 0.96527 0.94170 0.88488 1.21274 0.97346 1.34312 1.02540 0.93294 1.25905 1.02437 0.96230 0.94973 1.70073 1.37814 1.41611 1.07711 0.85351 0.79045 0.78156 0.78184 1.19464 1.20089 1.19734 1.21994 1.03834 0.95364 0.99944 0.90041 0.93855 0.92256 0.88447 0.90459 0.81494 0.80812 0.97564 0.96161 0.92526 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 71.98 0.71 -1.87 15 2 C -0.08 -1.65 6.11 29.85 0.18 -1.47 15 3 C -0.04 -1.19 5.17 -19.67 -0.10 -1.29 15 4 C -0.19 -5.23 9.82 22.36 0.22 -5.01 15 5 C 0.08 2.91 11.18 84.67 0.95 3.86 15 6 N -0.52 -24.14 9.95 -183.89 -1.83 -25.97 15 7 C 0.14 6.63 6.13 42.55 0.26 6.89 15 8 C 0.07 3.71 5.37 29.10 0.16 3.87 15 9 C -0.52 -31.41 8.91 25.60 0.23 -31.18 15 10 H 0.05 3.01 7.67 -2.91 -0.02 2.99 15 11 C 0.00 0.12 5.46 84.65 0.46 0.59 15 12 N -0.93 -57.71 13.29 21.45 0.28 -57.43 15 13 Si 0.97 46.37 29.54 68.60 2.03 48.40 15 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 15 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 15 17 C -0.19 -7.46 9.42 22.36 0.21 -7.25 15 18 H 0.08 1.10 8.14 -2.38 -0.02 1.08 15 19 H 0.04 0.91 8.14 -2.39 -0.02 0.89 15 20 H 0.06 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.10 1.54 8.10 -2.39 -0.02 1.52 15 22 H 0.08 1.56 8.10 -2.39 -0.02 1.55 15 23 H 0.17 3.13 8.06 -2.91 -0.02 3.11 15 24 H 0.17 4.68 8.06 -2.91 -0.02 4.66 15 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 15 26 H 0.02 1.17 7.87 -2.38 -0.02 1.15 15 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 28 H 0.13 4.79 7.95 -2.91 -0.02 4.77 15 Total: -1.00 -70.87 248.26 4.88 -65.99 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: 1.12 Total: 1.88 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 3.28 Total: -32.87 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.55 Total: -83.40 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -70.87 4.88 -65.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891047.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.208 kcal (2) G-P(sol) polarization free energy of solvation -70.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds