Wall clock time and date at job start Mon Mar 30 2020 02:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47290 * 239.99928 * 3 2 1 5 5 H 1.48498 * 109.47242 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46977 * 120.00438 * 3 2 1 7 7 C 1.37882 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00205 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.48301 * 60.01789 * 9 7 2 11 11 C 1.53214 * 109.47397 * 180.02562 * 9 7 2 12 12 C 1.53337 * 109.50011 * 189.96851 * 11 9 7 13 13 C 1.50929 * 108.45834 * 309.98341 * 12 11 9 14 14 O 1.33827 * 127.80644 * 196.72172 * 13 12 11 15 15 C 1.34522 * 109.42136 * 179.87600 * 14 13 12 16 16 C 1.34768 * 108.48364 * 0.05174 * 15 14 13 17 17 C 1.34895 * 123.89852 * 16.67811 * 13 12 11 18 18 C 1.50642 * 124.55758 * 0.21415 * 17 13 12 19 19 H 0.97001 * 120.00309 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.48057 * 69.95568 * 11 9 7 21 21 H 1.09007 * 109.48141 * 309.97505 * 11 9 7 22 22 H 1.09002 * 109.67380 * 190.23114 * 12 11 9 23 23 H 1.09004 * 109.67319 * 69.73392 * 12 11 9 24 24 H 1.07992 * 125.75883 * 180.08165 * 15 14 13 25 25 H 1.07999 * 126.68246 * 180.02562 * 16 15 14 26 26 H 1.08998 * 109.68072 * 136.07796 * 18 17 13 27 27 H 1.09001 * 109.68389 * 256.63355 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6249 -2.5566 -0.8920 11 6 2.2466 -3.6638 -0.0015 12 6 1.4973 -4.9778 -0.2528 13 6 0.3252 -5.0485 0.6955 14 8 -0.3959 -6.1252 1.0296 15 6 -1.3517 -5.7689 1.9066 16 6 -1.2460 -4.4457 2.1396 17 6 -0.1694 -3.9844 1.3609 18 6 0.3693 -2.5819 1.2509 19 1 -0.4850 0.8400 0.0004 20 1 2.7497 -3.7117 0.9643 21 1 2.9853 -3.5108 -0.7883 22 1 2.1648 -5.8208 -0.0747 23 1 1.1388 -5.0047 -1.2819 24 1 -2.0805 -6.4314 2.3495 25 1 -1.8667 -3.8547 2.7967 26 1 -0.4574 -1.8768 1.1650 27 1 0.9631 -2.3464 2.1341 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:29 Heat of formation + Delta-G solvation = -4.452456 kcal Electronic energy + Delta-G solvation = -11823.660065 eV Core-core repulsion = 9740.333370 eV Total energy + Delta-G solvation = -2083.326695 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.97005 -36.39424 -32.55800 -32.21578 -29.04456 -28.07517 -24.84557 -22.45452 -20.74832 -20.57765 -17.91522 -16.41066 -16.17684 -15.46574 -14.49864 -14.20825 -13.16964 -12.69051 -12.54487 -12.13012 -11.91375 -11.45743 -11.21283 -11.12532 -10.83986 -10.58881 -10.28325 -9.58596 -9.09486 -8.93299 -8.73762 -8.33741 -7.49936 -5.98049 -4.04234 2.36961 3.32865 3.37599 3.38150 3.40240 3.60028 4.44581 5.28191 5.35246 5.66649 5.73139 5.85299 5.98306 6.18620 6.44299 6.58304 6.60735 6.72478 6.85320 7.03734 7.08331 7.30239 7.42903 7.74002 7.92076 7.97418 8.10615 8.43923 8.99433 9.60508 11.08649 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.064968 B = 0.010778 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.877932 B = 2597.226702 C = 2915.396678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.048 3.952 10 H 0.029 0.971 11 C -0.107 4.107 12 C -0.030 4.030 13 C -0.035 4.035 14 O -0.183 6.183 15 C -0.073 4.073 16 C -0.204 4.204 17 C -0.157 4.157 18 C -0.045 4.045 19 H 0.261 0.739 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.193 0.807 25 H 0.141 0.859 26 H 0.095 0.905 27 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -7.776 2.180 8.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.047 0.953 11 C -0.144 4.144 12 C -0.067 4.067 13 C -0.085 4.085 14 O -0.081 6.081 15 C -0.140 4.140 16 C -0.223 4.223 17 C -0.158 4.158 18 C -0.082 4.082 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.210 0.790 25 H 0.158 0.842 26 H 0.113 0.887 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.600 -7.923 2.062 8.209 hybrid contribution 0.114 1.030 0.263 1.069 sum -0.486 -6.893 2.325 7.291 Atomic orbital electron populations 1.69899 1.05898 1.26561 1.50492 1.24989 0.94844 0.99084 0.95031 0.86669 0.79598 0.83195 0.78590 1.20292 1.21351 1.20299 1.21153 0.92886 0.90497 1.50929 0.92559 1.18763 0.92473 0.91690 0.94091 0.95332 1.21735 0.98646 0.93178 1.00881 1.20256 0.90965 0.99877 0.95651 1.22502 0.98228 0.84255 1.03499 1.83804 1.37470 1.36523 1.50273 1.23836 0.95840 0.96532 0.97806 1.21610 1.01404 0.94843 1.04446 1.21003 0.97239 0.98732 0.98813 1.20343 1.00585 0.88101 0.99186 0.92942 0.92864 0.91827 0.91615 0.90658 0.79026 0.84158 0.88654 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.47 55.43 0.64 -24.82 15 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -14.07 8.53 -34.44 -0.29 -14.36 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.05 1.21 2.08 -91.46 -0.19 1.02 15 10 H 0.03 0.78 8.12 -51.93 -0.42 0.36 15 11 C -0.11 -2.22 5.15 -26.45 -0.14 -2.35 15 12 C -0.03 -0.56 6.30 -27.60 -0.17 -0.73 15 13 C -0.04 -0.73 7.22 -35.38 -0.26 -0.98 15 14 O -0.18 -3.48 10.64 6.37 0.07 -3.41 15 15 C -0.07 -1.22 12.10 29.50 0.36 -0.86 15 16 C -0.20 -3.86 10.90 -39.90 -0.43 -4.29 15 17 C -0.16 -3.44 5.95 -104.93 -0.62 -4.07 15 18 C -0.04 -1.10 5.18 -27.70 -0.14 -1.24 15 19 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 20 H 0.05 1.09 8.12 -51.93 -0.42 0.67 15 21 H 0.06 1.24 8.11 -51.92 -0.42 0.82 15 22 H 0.07 1.04 8.14 -51.93 -0.42 0.61 15 23 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 24 H 0.19 2.25 8.06 -52.49 -0.42 1.83 15 25 H 0.14 2.37 8.06 -52.49 -0.42 1.95 15 26 H 0.10 2.58 6.46 -51.93 -0.34 2.24 15 27 H 0.05 1.28 8.11 -51.93 -0.42 0.86 15 LS Contribution 229.05 15.07 3.45 3.45 Total: -1.00 -29.27 229.05 -6.11 -35.38 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.25 Total: -0.46 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -1.99 Total: -26.26 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.64 Total: -24.82 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -29.27 -6.11 -35.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.929 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds