Wall clock time and date at job start Mon Mar 30 2020 02:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39026 * 126.73023 * 2 1 4 4 C 1.39809 * 125.71000 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99997 * 6.00503 * 4 3 2 6 6 C 1.40082 * 119.99967 * 186.00289 * 4 3 2 7 7 N 1.30852 * 119.99932 * 6.52121 * 6 4 3 8 8 Si 1.86797 * 119.99904 * 186.24068 * 6 4 3 9 9 H 1.48503 * 109.47439 * 265.29136 * 8 6 4 10 10 H 1.48496 * 109.47268 * 25.29361 * 8 6 4 11 11 H 1.48500 * 109.47140 * 145.29248 * 8 6 4 12 12 O 1.35192 * 108.57600 * 179.73654 * 3 2 1 13 13 C 1.34633 * 109.93251 * 0.26927 * 12 3 2 14 14 N 1.35747 * 145.05608 * 179.97438 * 13 12 3 15 15 H 0.97008 * 125.75795 * 0.02562 * 14 13 12 16 16 N 1.39933 * 108.47917 * 180.02562 * 14 13 12 17 17 C 1.30295 * 109.40929 * 0.02562 * 16 14 13 18 18 C 1.39829 * 108.21992 * 359.97438 * 13 12 3 19 19 H 1.08997 * 109.47755 * 90.01948 * 1 2 3 20 20 H 1.09006 * 109.47193 * 210.02220 * 1 2 3 21 21 H 1.09005 * 109.47123 * 330.01473 * 1 2 3 22 22 H 0.97001 * 120.00438 * 179.72367 * 7 6 4 23 23 H 1.07998 * 125.87235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3384 1.1142 0.0000 4 6 1.9166 2.4472 0.0005 5 1 0.8668 2.6814 0.0988 6 6 2.8555 3.4790 -0.1264 7 7 4.1090 3.1962 -0.3731 8 14 2.3165 5.2589 0.0486 9 1 2.0315 5.8243 -1.2946 10 1 1.0905 5.3251 0.8839 11 1 3.3992 6.0426 0.6959 12 8 3.6230 0.6930 0.0059 13 6 3.6648 -0.6527 0.0038 14 7 4.4765 -1.7407 0.0058 15 1 5.4464 -1.7244 0.0107 16 7 3.6779 -2.8898 -0.0005 17 6 2.4217 -2.5440 -0.0068 18 6 2.3508 -1.1309 -0.0032 19 1 -0.3634 -0.0003 -1.0276 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5136 22 1 4.7585 3.9108 -0.4650 23 1 1.5793 -3.2199 -0.0121 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259920962.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:54 Heat of formation + Delta-G solvation = 70.550005 kcal Electronic energy + Delta-G solvation = -11511.450700 eV Core-core repulsion = 9327.836012 eV Total energy + Delta-G solvation = -2183.614688 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.16077 -38.18415 -33.71690 -32.33746 -30.05788 -28.52942 -26.83612 -24.10773 -21.18705 -20.07250 -19.45698 -17.34013 -15.87950 -15.22738 -14.98022 -14.55200 -13.56454 -13.08801 -12.52177 -11.91751 -11.72378 -11.65320 -11.37515 -11.00948 -10.71546 -10.54201 -10.23438 -9.66533 -9.51513 -8.95176 -7.73117 -7.00061 -6.91196 -4.36759 2.73679 2.87818 2.93651 2.99903 3.05050 3.47612 3.81373 4.17602 4.81418 5.12277 5.68787 6.14774 6.35969 6.63892 6.75513 6.82884 6.91608 6.99819 7.38536 7.44883 7.74721 7.90227 8.15436 8.49979 8.53817 8.67035 9.06961 10.05731 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.060463 B = 0.012240 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.983195 B = 2287.064367 C = 2728.680835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.345 4.345 3 C 0.225 3.775 4 C -0.439 4.439 5 H 0.111 0.889 6 C 0.068 3.932 7 N -0.785 5.785 8 Si 0.923 3.077 9 H -0.267 1.267 10 H -0.257 1.257 11 H -0.275 1.275 12 O -0.149 6.149 13 C 0.110 3.890 14 N -0.460 5.460 15 H 0.427 0.573 16 N -0.289 5.289 17 C 0.059 3.941 18 C -0.193 4.193 19 H 0.031 0.969 20 H 0.034 0.966 21 H 0.044 0.956 22 H 0.285 0.715 23 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -0.922 0.551 1.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.350 4.350 3 C 0.175 3.825 4 C -0.469 4.469 5 H 0.129 0.871 6 C -0.153 4.153 7 N -0.410 5.410 8 Si 0.747 3.253 9 H -0.192 1.192 10 H -0.181 1.181 11 H -0.200 1.200 12 O -0.043 6.043 13 C -0.059 4.059 14 N -0.182 5.182 15 H 0.270 0.730 16 N -0.114 5.114 17 C -0.129 4.129 18 C -0.202 4.202 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.472 -1.513 0.519 1.667 hybrid contribution -0.024 1.433 0.017 1.434 sum -0.496 -0.079 0.535 0.734 Atomic orbital electron populations 1.19475 0.91474 0.99223 0.98641 1.18920 0.94331 0.89113 1.32663 1.19289 0.76469 0.93280 0.93483 1.18757 0.95659 0.86503 1.46007 0.87130 1.26128 0.94376 1.02587 0.92174 1.69768 1.02783 1.35846 1.32636 0.86034 0.79642 0.80141 0.79513 1.19222 1.18099 1.19977 1.84381 1.30473 1.12800 1.76640 1.19587 0.91474 0.83755 1.11042 1.44839 1.07144 0.98787 1.67475 0.72996 1.76786 1.02881 1.04148 1.27580 1.22901 0.94060 0.93629 1.02266 1.19115 0.93407 0.93029 1.14669 0.95041 0.94670 0.93736 0.90449 0.80898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.66 10.17 36.00 0.37 -0.30 14 2 C -0.35 -8.81 6.30 -103.25 -0.65 -9.46 14 3 C 0.23 6.19 6.73 -38.70 -0.26 5.93 14 4 C -0.44 -11.45 9.04 -38.30 -0.35 -11.79 14 5 H 0.11 2.67 7.19 -52.49 -0.38 2.29 14 6 C 0.07 1.67 5.49 -17.28 -0.09 1.58 14 7 N -0.78 -20.48 12.04 55.56 0.67 -19.81 14 8 Si 0.92 18.06 29.57 -169.99 -5.03 13.03 14 9 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 10 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 14 12 O -0.15 -4.18 8.98 2.29 0.02 -4.15 14 13 C 0.11 2.80 9.40 -15.22 -0.14 2.65 14 14 N -0.46 -9.92 7.35 31.03 0.23 -9.69 14 15 H 0.43 7.58 8.96 -182.72 -1.64 5.94 14 16 N -0.29 -6.12 12.59 30.88 0.39 -5.73 14 17 C 0.06 1.25 12.07 -16.96 -0.20 1.05 14 18 C -0.19 -4.79 6.98 -106.97 -0.75 -5.53 14 19 H 0.03 0.63 8.14 -51.93 -0.42 0.20 14 20 H 0.03 0.66 8.14 -51.93 -0.42 0.24 14 21 H 0.04 0.90 7.45 -51.93 -0.39 0.51 14 22 H 0.28 6.68 8.30 -40.82 -0.34 6.34 14 23 H 0.17 2.95 8.06 -52.49 -0.42 2.52 14 LS Contribution 214.28 15.07 3.23 3.23 Total: -1.00 -29.67 214.28 -5.38 -35.04 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.80 Total: 3.95 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.08 Total: -15.87 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 1.29 Total: -35.23 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: 0.02 Total: -4.15 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -29.67 -5.38 -35.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920962.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.593 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds