Wall clock time and date at job start Mon Mar 30 2020 02:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39026 * 126.73023 * 2 1 4 4 C 1.39809 * 125.71000 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99997 * 6.00503 * 4 3 2 6 6 C 1.40082 * 119.99967 * 186.00289 * 4 3 2 7 7 N 1.30852 * 119.99932 * 6.52121 * 6 4 3 8 8 Si 1.86797 * 119.99904 * 186.24068 * 6 4 3 9 9 H 1.48503 * 109.47439 * 265.29136 * 8 6 4 10 10 H 1.48496 * 109.47268 * 25.29361 * 8 6 4 11 11 H 1.48500 * 109.47140 * 145.29248 * 8 6 4 12 12 O 1.35192 * 108.57600 * 179.73654 * 3 2 1 13 13 C 1.34633 * 109.93251 * 0.26927 * 12 3 2 14 14 N 1.35747 * 145.05608 * 179.97438 * 13 12 3 15 15 H 0.97008 * 125.75795 * 0.02562 * 14 13 12 16 16 N 1.39933 * 108.47917 * 180.02562 * 14 13 12 17 17 C 1.30295 * 109.40929 * 0.02562 * 16 14 13 18 18 C 1.39829 * 108.21992 * 359.97438 * 13 12 3 19 19 H 1.08997 * 109.47755 * 90.01948 * 1 2 3 20 20 H 1.09006 * 109.47193 * 210.02220 * 1 2 3 21 21 H 1.09005 * 109.47123 * 330.01473 * 1 2 3 22 22 H 0.97001 * 120.00438 * 179.72367 * 7 6 4 23 23 H 1.07998 * 125.87235 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3384 1.1142 0.0000 4 6 1.9166 2.4472 0.0005 5 1 0.8668 2.6814 0.0988 6 6 2.8555 3.4790 -0.1264 7 7 4.1090 3.1962 -0.3731 8 14 2.3165 5.2589 0.0486 9 1 2.0315 5.8243 -1.2946 10 1 1.0905 5.3251 0.8839 11 1 3.3992 6.0426 0.6959 12 8 3.6230 0.6930 0.0059 13 6 3.6648 -0.6527 0.0038 14 7 4.4765 -1.7407 0.0058 15 1 5.4464 -1.7244 0.0107 16 7 3.6779 -2.8898 -0.0005 17 6 2.4217 -2.5440 -0.0068 18 6 2.3508 -1.1309 -0.0032 19 1 -0.3634 -0.0003 -1.0276 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5136 22 1 4.7585 3.9108 -0.4650 23 1 1.5793 -3.2199 -0.0121 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259920962.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:54 Heat of formation + Delta-G solvation = 49.812090 kcal Electronic energy + Delta-G solvation = -11512.349963 eV Core-core repulsion = 9327.836012 eV Total energy + Delta-G solvation = -2184.513951 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.03906 -40.02518 -35.59708 -34.19265 -31.81208 -30.42242 -28.62686 -25.97414 -22.97872 -21.94148 -21.29261 -19.23413 -17.73966 -17.02177 -16.88086 -16.39043 -15.24193 -14.75320 -14.34345 -13.61391 -13.45578 -13.45003 -12.97919 -12.78990 -12.53295 -12.11596 -12.04944 -11.45605 -11.30067 -10.72828 -9.59768 -8.91859 -8.76431 -6.29947 0.99176 1.12755 1.20203 1.40215 1.56953 1.70139 2.18265 2.34735 3.06752 3.20695 4.00410 4.35570 4.60001 4.86699 5.03888 5.09940 5.20386 5.27912 5.58763 5.65052 5.90623 6.05637 6.33687 6.63758 6.76316 6.76983 7.15969 8.25374 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.060463 B = 0.012240 C = 0.010259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.983195 B = 2287.064367 C = 2728.680835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.355 4.355 3 C 0.181 3.819 4 C -0.467 4.467 5 H 0.122 0.878 6 C 0.022 3.978 7 N -0.827 5.827 8 Si 1.003 2.997 9 H -0.259 1.259 10 H -0.247 1.247 11 H -0.269 1.269 12 O -0.175 6.175 13 C 0.075 3.925 14 N -0.453 5.453 15 H 0.442 0.558 16 N -0.278 5.278 17 C 0.072 3.928 18 C -0.216 4.216 19 H 0.041 0.959 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.292 0.708 23 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -1.050 0.687 3.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.360 4.360 3 C 0.132 3.868 4 C -0.497 4.497 5 H 0.140 0.860 6 C -0.194 4.194 7 N -0.454 5.454 8 Si 0.822 3.178 9 H -0.183 1.183 10 H -0.170 1.170 11 H -0.194 1.194 12 O -0.070 6.070 13 C -0.092 4.092 14 N -0.177 5.177 15 H 0.287 0.713 16 N -0.102 5.102 17 C -0.117 4.117 18 C -0.226 4.226 19 H 0.060 0.940 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.102 0.898 23 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.588 -1.667 0.653 2.393 hybrid contribution 0.351 1.313 -0.033 1.360 sum -1.236 -0.354 0.620 1.427 Atomic orbital electron populations 1.19533 0.88763 1.00567 0.99662 1.19538 0.96390 0.88851 1.31193 1.19914 0.76762 0.94754 0.95413 1.19177 0.96665 0.86874 1.46939 0.86007 1.27174 0.93983 1.07330 0.90920 1.69855 1.04220 1.37717 1.33614 0.84860 0.79474 0.73616 0.79867 1.18310 1.16981 1.19405 1.84296 1.31273 1.14307 1.77169 1.20077 0.93225 0.83507 1.12395 1.44916 1.07857 0.97713 1.67243 0.71302 1.76771 1.03040 1.03793 1.26591 1.23544 0.95101 0.92629 1.00440 1.19557 0.93009 0.94697 1.15308 0.94023 0.92348 0.93337 0.89755 0.76449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.16 10.17 71.23 0.72 -0.43 14 2 C -0.35 -18.02 6.30 -18.97 -0.12 -18.14 14 3 C 0.18 10.20 6.73 22.84 0.15 10.35 14 4 C -0.47 -24.70 9.04 23.10 0.21 -24.49 14 5 H 0.12 5.89 7.19 -2.91 -0.02 5.87 14 6 C 0.02 1.08 5.49 85.29 0.47 1.55 14 7 N -0.83 -44.23 12.04 21.86 0.26 -43.97 14 8 Si 1.00 36.65 29.57 68.60 2.03 38.68 14 9 H -0.26 -9.03 7.11 99.48 0.71 -8.32 14 10 H -0.25 -8.50 7.11 99.48 0.71 -7.79 14 11 H -0.27 -9.51 7.11 99.48 0.71 -8.80 14 12 O -0.18 -10.17 8.98 -14.72 -0.13 -10.31 14 13 C 0.08 3.89 9.40 84.47 0.79 4.68 14 14 N -0.45 -19.24 7.35 -167.32 -1.23 -20.47 14 15 H 0.44 15.49 8.96 -213.42 -1.91 13.58 14 16 N -0.28 -11.17 12.59 -56.21 -0.71 -11.88 14 17 C 0.07 2.85 12.07 85.72 1.04 3.88 14 18 C -0.22 -10.57 6.98 -21.39 -0.15 -10.72 14 19 H 0.04 1.59 8.14 -2.39 -0.02 1.57 14 20 H 0.06 2.06 8.14 -2.38 -0.02 2.04 14 21 H 0.05 1.89 7.45 -2.38 -0.02 1.88 14 22 H 0.29 13.98 8.30 -92.71 -0.77 13.21 14 23 H 0.22 6.45 8.06 -2.91 -0.02 6.42 14 Total: -1.00 -64.27 214.28 2.67 -61.60 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.66 Total: 19.65 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.12 Total: -33.31 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -1.67 Total: -76.31 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.13 Total: -10.31 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -64.27 2.67 -61.60 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920962.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.409 kcal (2) G-P(sol) polarization free energy of solvation -64.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds