Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48502 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47615 * 300.00232 * 3 2 1 6 6 H 1.48500 * 109.47221 * 60.00740 * 3 2 1 7 7 C 1.37880 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99804 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.61718 * 59.78064 * 9 7 2 11 11 C 1.53175 * 109.54085 * 180.02562 * 9 7 2 12 12 C 1.53092 * 109.16344 * 176.84900 * 11 9 7 13 13 O 1.42905 * 109.41215 * 302.38824 * 12 11 9 14 14 C 1.42905 * 114.09831 * 61.16158 * 13 12 11 15 15 C 1.53098 * 109.41155 * 298.83847 * 14 13 12 16 16 F 1.39895 * 109.52354 * 297.70122 * 15 14 13 17 17 F 1.39902 * 109.57343 * 177.54307 * 15 14 13 18 18 H 0.97005 * 120.00337 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.52714 * 56.93920 * 11 9 7 20 20 H 1.08998 * 109.52443 * 296.75185 * 11 9 7 21 21 H 1.08997 * 109.48111 * 182.40965 * 12 11 9 22 22 H 1.08999 * 109.49220 * 62.37875 * 12 11 9 23 23 H 1.09000 * 109.47932 * 58.81878 * 14 13 12 24 24 H 1.08993 * 109.48024 * 178.86013 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6202 -2.5575 -0.8875 11 6 2.2450 -3.6646 -0.0005 12 6 1.4724 -4.9839 0.0790 13 8 0.6578 -4.9873 1.2531 14 6 -0.3223 -3.9478 1.2862 15 6 0.3782 -2.5868 1.2552 16 9 1.1804 -2.4479 2.3929 17 9 -0.5794 -1.5672 1.2311 18 1 -0.4851 0.8401 0.0004 19 1 2.9078 -3.5782 0.8605 20 1 2.8332 -3.6417 -0.9179 21 1 2.1761 -5.8151 0.1224 22 1 0.8400 -5.0888 -0.8026 23 1 -0.9782 -4.0389 0.4204 24 1 -0.9114 -4.0327 2.1993 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921094.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = -134.882206 kcal Electronic energy + Delta-G solvation = -13047.281258 eV Core-core repulsion = 10404.069174 eV Total energy + Delta-G solvation = -2643.212083 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.070 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -47.17731 -45.11340 -38.13252 -33.75614 -31.41226 -29.46988 -26.15021 -22.84514 -22.44874 -19.39668 -16.74308 -16.10478 -15.96687 -14.97196 -14.85942 -14.48766 -14.32352 -13.24720 -12.52167 -12.22285 -11.88303 -11.73040 -11.44788 -11.13598 -10.91336 -10.77683 -10.67021 -10.42925 -9.69161 -9.57321 -9.36386 -8.43105 -8.38062 -5.95025 -4.09483 3.29765 3.37588 3.41726 4.25967 4.41376 4.96377 5.17545 5.51272 5.64499 5.75564 5.79747 5.92730 6.07640 6.33344 6.37366 6.66771 6.84752 6.99123 7.49195 7.63927 7.87810 8.17762 8.85510 9.53017 10.99601 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.057753 B = 0.016183 C = 0.014431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.703203 B = 1729.782400 C = 1939.737844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.012 3.988 10 H 0.049 0.951 11 C -0.145 4.145 12 C 0.053 3.947 13 O -0.377 6.377 14 C 0.020 3.980 15 C 0.260 3.740 16 F -0.212 7.212 17 F -0.155 7.155 18 H 0.258 0.742 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 -6.146 -0.090 6.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.081 0.919 9 C -0.007 4.007 10 H 0.067 0.933 11 C -0.183 4.183 12 C -0.023 4.023 13 O -0.296 6.296 14 C -0.058 4.058 15 C 0.222 3.778 16 F -0.193 7.193 17 F -0.135 7.135 18 H 0.068 0.932 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.106 0.894 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.025 -6.119 0.078 6.119 hybrid contribution 0.311 1.243 -0.057 1.282 sum 0.286 -4.876 0.021 4.884 Atomic orbital electron populations 1.70424 1.05599 1.26004 1.46573 1.25094 0.95044 0.99586 0.94683 0.86440 0.80100 0.83367 0.77542 1.19699 1.20974 1.20902 1.20863 0.93127 0.89225 1.53709 0.91919 1.19679 0.93859 0.94974 0.92217 0.93327 1.22247 0.99507 0.94012 1.02491 1.22765 0.93479 0.98714 0.87338 1.87873 1.48932 1.50214 1.42581 1.23663 0.91136 0.87686 1.03323 1.22344 0.83666 0.85130 0.86669 1.92849 1.75532 1.96562 1.54372 1.93198 1.64058 1.59849 1.96440 0.93159 0.91374 0.91127 0.89446 0.93469 0.91247 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.68 9.59 55.43 0.53 -24.15 14 2 C 0.06 1.73 5.24 -17.82 -0.09 1.64 14 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 14 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 14 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 14 7 C -0.53 -14.82 8.24 -34.44 -0.28 -15.10 14 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 14 9 C 0.01 0.29 1.99 -91.59 -0.18 0.11 14 10 H 0.05 1.26 8.14 -51.93 -0.42 0.84 14 11 C -0.14 -2.97 5.23 -26.59 -0.14 -3.11 14 12 C 0.05 0.93 6.84 37.20 0.25 1.19 14 13 O -0.38 -7.42 10.74 -35.23 -0.38 -7.80 14 14 C 0.02 0.40 6.33 37.21 0.24 0.64 14 15 C 0.26 6.44 1.66 -26.59 -0.04 6.39 14 16 F -0.21 -5.57 16.31 2.25 0.04 -5.54 14 17 F -0.15 -4.26 12.89 2.25 0.03 -4.24 14 18 H 0.26 7.14 8.31 -40.82 -0.34 6.80 14 19 H 0.07 1.46 7.94 -51.93 -0.41 1.05 14 20 H 0.07 1.33 8.14 -51.93 -0.42 0.91 14 21 H 0.09 1.27 8.14 -51.93 -0.42 0.84 14 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 14 23 H 0.07 1.29 8.14 -51.93 -0.42 0.86 14 24 H 0.10 1.75 8.14 -51.93 -0.42 1.33 14 LS Contribution 208.76 15.07 3.15 3.15 Total: -1.00 -30.29 208.76 -4.40 -34.69 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -2.49 Total: -4.60 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.25 Total: -8.24 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.53 Total: -24.15 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.38 Total: -7.80 kcal Atomic # 9 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -30.29 -4.40 -34.69 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921094.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.192 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds