Wall clock time and date at job start Mon Mar 30 2020 02:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99571 * 2 1 4 4 H 1.48500 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47094 * 300.00171 * 3 2 1 6 6 H 1.48504 * 109.46987 * 60.00277 * 3 2 1 7 7 C 1.37870 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00060 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.54750 * 300.17748 * 9 7 2 11 11 C 1.53181 * 109.54569 * 179.97438 * 9 7 2 12 12 C 1.53090 * 109.16481 * 183.15083 * 11 9 7 13 13 O 1.42905 * 109.41466 * 57.61337 * 12 11 9 14 14 C 1.42905 * 114.09831 * 298.84306 * 13 12 11 15 15 C 1.53087 * 109.41504 * 61.15479 * 14 13 12 16 16 F 1.39907 * 109.52314 * 182.48990 * 15 14 13 17 17 F 1.39898 * 109.52580 * 62.30143 * 15 14 13 18 18 H 0.96996 * 120.00094 * 0.02562 * 1 2 3 19 19 H 1.09007 * 109.52008 * 63.25173 * 11 9 7 20 20 H 1.08997 * 109.57581 * 303.09505 * 11 9 7 21 21 H 1.08998 * 109.48371 * 297.63244 * 12 11 9 22 22 H 1.09004 * 109.48242 * 177.59100 * 12 11 9 23 23 H 1.08994 * 109.48072 * 181.14100 * 14 13 12 24 24 H 1.09001 * 109.47741 * 301.17313 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6220 -2.5570 0.8876 11 6 2.2452 -3.6646 -0.0018 12 6 1.4726 -4.9839 -0.0813 13 8 0.6570 -4.9868 -1.2548 14 6 -0.3230 -3.9473 -1.2868 15 6 0.3774 -2.5864 -1.2557 16 9 -0.5812 -1.5677 -1.2297 17 9 1.1788 -2.4469 -2.3939 18 1 -0.4850 0.8400 -0.0004 19 1 2.8341 -3.6421 0.9152 20 1 2.9081 -3.5782 -0.8627 21 1 0.8408 -5.0889 0.8007 22 1 2.1763 -5.8152 -0.1257 23 1 -0.9128 -4.0318 -2.1995 24 1 -0.9783 -4.0387 -0.4206 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921122.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:33 Heat of formation + Delta-G solvation = -154.650379 kcal Electronic energy + Delta-G solvation = -13047.978106 eV Core-core repulsion = 10403.908810 eV Total energy + Delta-G solvation = -2644.069296 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.070 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.18085 -47.15236 -39.70187 -35.69395 -33.32207 -31.11269 -28.06166 -24.68951 -24.13862 -21.19247 -18.75508 -17.87516 -17.82202 -16.83944 -16.65200 -16.25722 -16.10786 -14.95281 -14.48766 -14.16664 -13.71960 -13.47721 -13.42499 -13.00030 -12.75046 -12.70016 -12.46441 -12.27606 -11.61416 -11.23080 -11.16070 -10.54596 -10.18712 -8.07337 -6.27366 1.37219 1.39649 1.50827 2.38854 2.78785 3.07931 3.20126 3.91363 3.99512 4.06702 4.24302 4.45534 4.49009 4.66242 4.73074 4.92872 5.13996 5.22778 5.56633 5.74965 6.10040 6.13357 6.71499 7.37537 8.86339 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.057748 B = 0.016183 C = 0.014431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.752881 B = 1729.773699 C = 1939.818116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.002 3.998 10 H 0.034 0.966 11 C -0.139 4.139 12 C 0.054 3.946 13 O -0.381 6.381 14 C 0.032 3.968 15 C 0.242 3.758 16 F -0.176 7.176 17 F -0.226 7.226 18 H 0.257 0.743 19 H 0.085 0.915 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.126 0.874 23 H 0.115 0.885 24 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -7.056 0.369 7.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.075 0.925 9 C -0.017 4.017 10 H 0.052 0.948 11 C -0.177 4.177 12 C -0.022 4.022 13 O -0.300 6.300 14 C -0.046 4.046 15 C 0.205 3.795 16 F -0.157 7.157 17 F -0.207 7.207 18 H 0.067 0.933 19 H 0.103 0.897 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.143 0.857 23 H 0.133 0.867 24 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.367 -7.045 0.207 7.057 hybrid contribution 0.226 1.516 -0.008 1.532 sum 0.593 -5.529 0.198 5.564 Atomic orbital electron populations 1.70564 1.06696 1.26570 1.47354 1.25869 0.95953 1.02835 0.94544 0.85513 0.79098 0.79502 0.77608 1.19095 1.21116 1.19915 1.21231 0.93179 0.91012 1.53686 0.92542 1.19720 0.94518 0.95721 0.91746 0.94827 1.22188 0.98709 0.94186 1.02627 1.22967 0.93887 0.97922 0.87426 1.87884 1.48955 1.49335 1.43817 1.23550 0.91009 0.84812 1.05203 1.22725 0.83741 0.87037 0.85995 1.93142 1.64596 1.61466 1.96490 1.92811 1.76123 1.96784 1.54990 0.93301 0.89652 0.92801 0.91574 0.85658 0.86744 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.29 9.59 21.45 0.21 -51.09 14 2 C 0.01 0.61 5.24 84.65 0.44 1.05 14 3 Si 0.96 44.74 29.54 68.60 2.03 46.77 14 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 14 5 H -0.29 -13.32 7.11 99.48 0.71 -12.62 14 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 14 7 C -0.55 -30.99 8.24 25.60 0.21 -30.78 14 8 H 0.06 3.13 7.75 -2.91 -0.02 3.11 14 9 C 0.00 0.10 1.99 -11.42 -0.02 0.08 14 10 H 0.03 1.75 8.14 -2.39 -0.02 1.73 14 11 C -0.14 -5.49 5.23 30.68 0.16 -5.33 14 12 C 0.05 1.69 6.84 72.01 0.49 2.19 14 13 O -0.38 -13.84 10.74 -148.98 -1.60 -15.44 14 14 C 0.03 1.24 6.33 72.01 0.46 1.69 14 15 C 0.24 11.91 1.66 30.69 0.05 11.96 14 16 F -0.18 -9.78 12.89 44.97 0.58 -9.20 14 17 F -0.23 -11.87 16.31 44.97 0.73 -11.13 14 18 H 0.26 14.40 8.31 -92.71 -0.77 13.63 14 19 H 0.08 3.05 8.14 -2.38 -0.02 3.03 14 20 H 0.05 2.25 7.94 -2.39 -0.02 2.23 14 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 14 22 H 0.13 3.05 8.14 -2.38 -0.02 3.03 14 23 H 0.11 3.92 8.14 -2.39 -0.02 3.90 14 24 H 0.09 3.02 8.14 -2.39 -0.02 3.00 14 Total: -1.00 -64.18 208.77 4.93 -59.25 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: 1.19 Total: -0.03 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 1.79 Total: -19.14 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.21 Total: -51.09 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -1.60 Total: -15.44 kcal Atomic # 9 Polarization: -21.64 SS G_CDS: 1.31 Total: -20.33 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -64.18 4.93 -59.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921122.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.400 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds