Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38224 * 119.61972 * 124.72871 * 3 2 1 5 5 C 1.38627 * 119.15930 * 179.75812 * 4 3 2 6 6 C 1.38669 * 118.42261 * 0.50179 * 5 4 3 7 7 C 1.38190 * 119.16123 * 359.73768 * 6 5 4 8 8 C 1.50703 * 119.61627 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.46920 * 125.02092 * 8 7 6 10 10 H 1.07994 * 120.00318 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99302 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00422 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99608 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47054 * 90.00098 * 13 11 9 15 15 H 1.48500 * 109.47229 * 210.00105 * 13 11 9 16 16 H 1.48498 * 109.47171 * 330.00245 * 13 11 9 17 17 N 1.31855 * 119.61255 * 304.99637 * 3 2 1 18 18 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 21 21 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 22 22 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 23 23 H 1.07995 * 120.42094 * 359.97384 * 4 3 2 24 24 H 1.08000 * 120.78874 * 180.21864 * 5 4 3 25 25 H 1.07996 * 120.42049 * 179.75914 * 6 5 4 26 26 H 1.08997 * 109.46288 * 245.01855 * 8 7 6 27 27 H 1.08999 * 109.46906 * 5.01695 * 8 7 6 28 28 H 0.96998 * 120.00082 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9055 1.8367 0.9876 5 6 3.3656 3.1444 0.9755 6 6 2.9200 3.9916 -0.0278 7 6 2.0427 3.5062 -0.9788 8 6 1.5525 4.4178 -2.0741 9 6 1.8433 3.7939 -3.4147 10 1 2.3344 2.8336 -3.4682 11 6 1.4823 4.4493 -4.5728 12 7 0.8847 5.6190 -4.5076 13 14 1.8434 3.6763 -6.2346 14 1 0.6937 2.8325 -6.6484 15 1 2.0600 4.7460 -7.2416 16 1 3.0636 2.8359 -6.1350 17 7 1.6297 2.2543 -0.9391 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 0.5139 0.8900 21 1 1.8934 -0.5137 0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 3.2279 1.1507 1.7568 24 1 4.0511 3.4962 1.7322 25 1 3.2547 5.0177 -0.0658 26 1 0.4780 4.5674 -1.9683 27 1 2.0620 5.3787 -2.0022 28 1 0.6311 6.0801 -5.3224 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921983.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = 11.979768 kcal Electronic energy + Delta-G solvation = -11260.059555 eV Core-core repulsion = 9275.164076 eV Total energy + Delta-G solvation = -1984.895478 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.59789 -34.26950 -33.01750 -31.70720 -29.99334 -27.41984 -24.20299 -23.42557 -21.04413 -20.56795 -16.35907 -15.79659 -15.50868 -14.83622 -14.28824 -13.97296 -13.41279 -12.88880 -12.36176 -12.15483 -11.70346 -11.58904 -11.30999 -10.95952 -10.80594 -10.61074 -10.58300 -9.77345 -9.37562 -9.11123 -8.52602 -8.36282 -7.99474 -5.99042 -3.99297 1.81509 1.96666 3.35917 3.41188 3.45950 4.42912 4.57676 4.86046 5.10660 5.37464 5.47279 5.48957 5.61517 5.73574 5.81157 5.87880 6.09064 6.28793 6.35094 6.50129 6.60583 6.72704 6.84330 7.39035 7.56858 7.59324 7.98021 8.35124 8.93698 9.04309 9.62740 11.12319 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.010540 C = 0.009134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.761751 B = 2655.830170 C = 3064.568454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C 0.124 3.876 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.192 4.192 7 C 0.177 3.823 8 C 0.058 3.942 9 C -0.497 4.497 10 H 0.059 0.941 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.275 1.275 17 N -0.468 5.468 18 H 0.051 0.949 19 H 0.071 0.929 20 H 0.048 0.952 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.128 0.872 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -7.031 9.600 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.015 4.015 4 C -0.227 4.227 5 C -0.104 4.104 6 C -0.212 4.212 7 C 0.040 3.960 8 C 0.021 3.979 9 C -0.536 4.536 10 H 0.077 0.923 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.200 1.200 17 N -0.178 5.178 18 H 0.070 0.930 19 H 0.090 0.910 20 H 0.067 0.933 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.138 0.862 24 H 0.140 0.860 25 H 0.146 0.854 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.927 -7.179 8.851 11.558 hybrid contribution 0.874 0.017 -0.220 0.902 sum 2.801 -7.162 8.631 11.560 Atomic orbital electron populations 1.21656 0.94471 1.00960 1.02920 1.20396 0.96846 0.91242 1.02159 1.21298 0.93327 0.96087 0.90781 1.21706 1.02405 0.97036 1.01525 1.21420 0.97835 0.93633 0.97545 1.22070 1.01233 1.01099 0.96813 1.22269 0.89595 0.90728 0.93387 1.18337 0.97353 0.92265 0.89927 1.20994 1.38314 1.04776 0.89505 0.92264 1.24989 0.95320 0.94968 0.99278 1.69947 1.41262 1.14379 1.28282 0.86506 0.78723 0.78804 0.83464 1.20584 1.21278 1.19962 1.67453 1.24379 1.03732 1.22209 0.93000 0.91028 0.93296 0.91275 0.90444 0.86193 0.85983 0.85431 0.94087 0.94636 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.77 37.16 0.36 -1.66 15 2 C -0.07 -1.00 6.33 -27.88 -0.18 -1.18 15 3 C 0.12 2.28 6.18 -82.58 -0.51 1.77 15 4 C -0.21 -3.34 9.71 -39.44 -0.38 -3.72 15 5 C -0.08 -1.28 10.18 -39.28 -0.40 -1.68 15 6 C -0.19 -3.72 9.71 -39.44 -0.38 -4.10 15 7 C 0.18 4.10 6.13 -82.59 -0.51 3.59 15 8 C 0.06 1.55 5.37 -29.04 -0.16 1.40 15 9 C -0.50 -14.44 8.91 -34.44 -0.31 -14.75 15 10 H 0.06 1.75 7.68 -52.49 -0.40 1.34 15 11 C 0.05 1.60 5.46 -17.82 -0.10 1.50 15 12 N -0.90 -26.98 13.29 55.43 0.74 -26.24 15 13 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 15 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 15 17 N -0.47 -10.55 9.48 -5.74 -0.05 -10.60 15 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 19 H 0.07 1.20 7.95 -51.93 -0.41 0.79 15 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.07 0.81 7.87 -51.93 -0.41 0.40 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.12 1.53 7.95 -52.49 -0.42 1.11 15 24 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.13 2.24 7.95 -52.49 -0.42 1.82 15 26 H 0.04 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.04 0.95 7.87 -51.93 -0.41 0.54 15 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 247.57 15.07 3.73 3.73 Total: -1.00 -31.14 247.57 -6.88 -38.02 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -3.72 Total: -3.27 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.56 Total: -18.83 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.68 Total: -36.84 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.14 -6.88 -38.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921983.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.996 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds